View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17710_high_25 (Length: 319)
Name: NF17710_high_25
Description: NF17710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17710_high_25 |
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Alignment Details
Target: chr3 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 292
Target Start/End: Original strand, 32062576 - 32062873
Alignment:
| Q |
1 |
caatagtggaaaggaattcggtgggttttcaatccttgccgatgatgatgatgacctcaaacagaaacaaggaggtaagccaatagattttgttcggnnn |
100 |
Q |
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| T |
32062576 |
caatagtggaaaggaattcggtgggttttcaatccttgccgatgatgatgatgacctcaaacagaaacaaggaggtaagccaatagattttgttcggaaa |
32062675 |
T |
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| Q |
101 |
nnnngattaatgaagcaggagaaagcaccggggaacaacagtggaaaggaactcagtgggttttcgatacttgcggatgatg---tccatc----tcatt |
193 |
Q |
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| T |
32062676 |
aaaagattaatgaagcaggagaaagcaccggggaacaacagtggaaaggaactcagtgggttttcgatacttgcggatgatgacctcgagcagaaacaac |
32062775 |
T |
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| Q |
194 |
gctcctagaataccaaaatcgcgaggaaagtcaaaggaatcagatttatttgagccaactctccacacaaaggaagccatggatgacattaacatgatg |
292 |
Q |
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| T |
32062776 |
g-tcctccactaccaaaatcgcgaggaaagtcaaaggaatcagatttatttgagccaactctccacacaaaggaagccatggatgacattaacatgatg |
32062873 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 111 - 182
Target Start/End: Original strand, 32062551 - 32062622
Alignment:
| Q |
111 |
tgaagcaggagaaagcaccggggaacaacagtggaaaggaactcagtgggttttcgatacttgcggatgatg |
182 |
Q |
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| T |
32062551 |
tgaagcaagagaatgcaccggagaacaatagtggaaaggaattcggtgggttttcaatccttgccgatgatg |
32062622 |
T |
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