View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17710_high_29 (Length: 312)
Name: NF17710_high_29
Description: NF17710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17710_high_29 |
 | |
|
| [»] chr7 (13 HSPs) |
| |
|
| [»] scaffold0491 (2 HSPs) |
| |
|
| [»] chr8 (5 HSPs) |
| |
|
| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 285; Significance: 1e-160; HSPs: 13)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 20 - 312
Target Start/End: Complemental strand, 1541790 - 1541498
Alignment:
| Q |
20 |
gacatcatcaaagcaacagaagacttcgacatgagatattgcattggaacaggagcatatggaagtgtttacaaggcacaattaccatgtggcaaggttg |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
1541790 |
gacatcatcaaagcaacagaagacttcgacatgagatattgcattggaaccggagcatatggaagtgtttacaaggcacaattaccatgtggaaaggttg |
1541691 |
T |
|
| Q |
120 |
ttgccttaaagaaacttcacggctatgaagccgaggttccatcttttgatgagagtttcagaaatgaagtgagaatattatcagaaataaagcaccgaca |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1541690 |
ttgccttaaagaaacttcacggctatgaagccgaggttccatcttttgatgagagtttcagaaatgaagtgagaatattatcagaaataaagcaccgaca |
1541591 |
T |
|
| Q |
220 |
tattgtgaagctttatggattttgcttgcacaaaagaatcatgtttttgatctatcaatacatggagagaggaagcttattctctgtcttgta |
312 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1541590 |
tattgtgaagctttatggattttgcttgcacaaaagaatcatgtttttgatctatcaatacatggagagaggaagcttattctctgtcttgta |
1541498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 31 - 312
Target Start/End: Original strand, 1604237 - 1604518
Alignment:
| Q |
31 |
agcaacagaagacttcgacatgagatattgcattggaacaggagcatatggaagtgtttacaaggcacaattaccatgtggcaaggttgttgccttaaag |
130 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
1604237 |
agcaacggaagacttcgacatgagatattgcattggaacaggagcatatggaagtgtttacaaggcacaattaccaagtggcaaggttgttgccttaaag |
1604336 |
T |
|
| Q |
131 |
aaacttcacggctatgaagccgaggttccatcttttgatgagagtttcagaaatgaagtgagaatattatcagaaataaagcaccgacatattgtgaagc |
230 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1604337 |
aaacttcacggctatgaagaagaggttccatcttttgatgagagtttcaaaaatgaagtgaaaatattatcagaaataaagcaccgacatattgtgaagc |
1604436 |
T |
|
| Q |
231 |
tttatggattttgcttgcacaaaagaatcatgtttttgatctatcaatacatggagagaggaagcttattctctgtcttgta |
312 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| |
|
|
| T |
1604437 |
tttatggattctgcttgcacaaaagaatcatgtttttgatctatcaatacatggagaaaggaagcttgttctctgtcttgta |
1604518 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 20 - 312
Target Start/End: Original strand, 1088490 - 1088782
Alignment:
| Q |
20 |
gacatcatcaaagcaacagaagacttcgacatgagatattgcattggaacaggagcatatggaagtgtttacaaggcacaattaccatgtggcaaggttg |
119 |
Q |
| |
|
||||| || ||||||||||| ||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
1088490 |
gacattattaaagcaacagaggactttgacatgagatattgcattggaacaggagcatatagaagtgtttacaaggcacaattaccaagtggcaaggttg |
1088589 |
T |
|
| Q |
120 |
ttgccttaaagaaacttcacggctatgaagccgaggttccatcttttgatgagagtttcagaaatgaagtgagaatattatcagaaataaagcaccgaca |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
1088590 |
ttgccttaaagaaacttcacggctatgaagccgaggttccatcttttgatgagagtttcaaaaatgaagtgagaatattatcagaaataaagcacaaaca |
1088689 |
T |
|
| Q |
220 |
tattgtgaagctttatggattttgcttgcacaaaagaatcatgtttttgatctatcaatacatggagagaggaagcttattctctgtcttgta |
312 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| |
|
|
| T |
1088690 |
tattgtgaagctttatggattctgcttgcacaaaagaatcatgtttttgatctatcaatacatggagaaaggaagcttgttctctgtcttgta |
1088782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 20 - 312
Target Start/End: Complemental strand, 1557734 - 1557442
Alignment:
| Q |
20 |
gacatcatcaaagcaacagaagacttcgacatgagatattgcattggaacaggagcatatggaagtgtttacaaggcacaattaccatgtggcaaggttg |
119 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| |
|
|
| T |
1557734 |
gacatcatcaaagcaacagaagactttgacatgagatattgcattggaacaggagcatatggaagtgtttacaaggcacaattaccatgtggtaatgttg |
1557635 |
T |
|
| Q |
120 |
ttgccttaaagaaacttcacggctatgaagccgaggttccatcttttgatgagagtttcagaaatgaagtgagaatattatcagaaataaagcaccgaca |
219 |
Q |
| |
|
|||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
1557634 |
ttgctttaaagaaacttcacggctatgaagctgaggttccatcttttgatgagagtttcagaaatgaagtgagaatattatcagaaataaagcacaaaca |
1557535 |
T |
|
| Q |
220 |
tattgtgaagctttatggattttgcttgcacaaaagaatcatgtttttgatctatcaatacatggagagaggaagcttattctctgtcttgta |
312 |
Q |
| |
|
||| ||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||| ||||||||| |||||||||||||| |
|
|
| T |
1557534 |
tatcgtgaagctttatggattctgcttgcacaaaagaatcatgtttttgatatatcaatacatggagaaaggaagcttgttctctgtcttgta |
1557442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 20 - 312
Target Start/End: Original strand, 1595896 - 1596188
Alignment:
| Q |
20 |
gacatcatcaaagcaacagaagacttcgacatgagatattgcattggaacaggagcatatggaagtgtttacaaggcacaattaccatgtggcaaggttg |
119 |
Q |
| |
|
||||| |||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||| |||| ||||||| |
|
|
| T |
1595896 |
gacataatcaaagcaacagaagactttgacatgagatattgcattggaacgggagcatatggaagtgtttacagggcacaattaccaagtggaaaggttg |
1595995 |
T |
|
| Q |
120 |
ttgccttaaagaaacttcacggctatgaagccgaggttccatcttttgatgagagtttcagaaatgaagtgagaatattatcagaaataaagcaccgaca |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1595996 |
ttgccttaaagaaacttcacggctatgaagccgaggttccatcttttgatgagagtttcaaaaatgaagtgagaatattatcagaaataaagcaccgaca |
1596095 |
T |
|
| Q |
220 |
tattgtgaagctttatggattttgcttgcacaaaagaatcatgtttttgatctatcaatacatggagagaggaagcttattctctgtcttgta |
312 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||| ||||||| | |||||||||||||| |
|
|
| T |
1596096 |
tattgtgaagctttatggattctgcttgcacaaaagaatcatgtttttgatctatcagtacatggagaaaggaagcctgttctctgtcttgta |
1596188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 20 - 312
Target Start/End: Original strand, 1105839 - 1106131
Alignment:
| Q |
20 |
gacatcatcaaagcaacagaagacttcgacatgagatattgcattggaacaggagcatatggaagtgtttacaaggcacaattaccatgtggcaaggttg |
119 |
Q |
| |
|
||||| ||||||||||| |||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
1105839 |
gacataatcaaagcaacggaagactttgacatgagatattgcattggaactggagcatatggaagtgtttacaaggcacaattaccaagtggcaaggttg |
1105938 |
T |
|
| Q |
120 |
ttgccttaaagaaacttcacggctatgaagccgaggttccatcttttgatgagagtttcagaaatgaagtgagaatattatcagaaataaagcaccgaca |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1105939 |
ttgccttaaagaaacttcacggctatgaagtcgaggttccatcttttgatgagagtttcaaaaatgaagtgagaatattatcagaaataaagcaccgaca |
1106038 |
T |
|
| Q |
220 |
tattgtgaagctttatggattttgcttgcacaaaagaatcatgtttttgatctatcaatacatggagagaggaagcttattctctgtcttgta |
312 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||| ||||||| | |||||| ||||||| |
|
|
| T |
1106039 |
tattgtgaagctttatggattctgcttgcacaaaagaatcatgtttttgatctatcagtacatggagaaaggaagcctgttctctatcttgta |
1106131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 20 - 312
Target Start/End: Complemental strand, 1551024 - 1550732
Alignment:
| Q |
20 |
gacatcatcaaagcaacagaagacttcgacatgagatattgcattggaacaggagcatatggaagtgtttacaaggcacaattaccatgtggcaaggttg |
119 |
Q |
| |
|
||||| || ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1551024 |
gacattattaaagcaacagaagactttgacatgagatattgcattggaaccggagcatatggaagtgtttacaaggcacaattaccatgtggcaaggttg |
1550925 |
T |
|
| Q |
120 |
ttgccttaaagaaacttcacggctatgaagccgaggttccatcttttgatgagagtttcagaaatgaagtgagaatattatcagaaataaagcaccgaca |
219 |
Q |
| |
|
| ||||||||||||||||| ||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
1550924 |
tcgccttaaagaaacttcatggctatgaagcagacgttccatcttttgatgagagtttcagaaatgaagtgagaatattgacagaaataaagcaccgaca |
1550825 |
T |
|
| Q |
220 |
tattgtgaagctttatggattttgcttgcacaaaagaatcatgtttttgatctatcaatacatggagagaggaagcttattctctgtcttgta |
312 |
Q |
| |
|
||||||||||||| ||||||| ||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| ||| |||||||||| |
|
|
| T |
1550824 |
tattgtgaagcttcatggattctgcttgcacaagagaatcatgtttttgatctatcagtacatggagagaggaagcttgttcactgtcttgta |
1550732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 20 - 312
Target Start/End: Original strand, 2321032 - 2321324
Alignment:
| Q |
20 |
gacatcatcaaagcaacagaagacttcgacatgagatattgcattggaacaggagcatatggaagtgtttacaaggcacaattaccatgtggcaaggttg |
119 |
Q |
| |
|
|||||||| | |||||| ||||| || ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| |
|
|
| T |
2321032 |
gacatcattagagcaacggaagattttgacattagatattgcattggaacaggagcatatggaagtgtttacaaggcacaattaccatgtggaaaagttg |
2321131 |
T |
|
| Q |
120 |
ttgccttaaagaaacttcacggctatgaagccgaggttccatcttttgatgagagtttcagaaatgaagtgagaatattatcagaaataaagcaccgaca |
219 |
Q |
| |
|
||||||| ||||||||||||||||||||||| ||| | ||| |||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
2321132 |
ttgccttgaagaaacttcacggctatgaagcagagctgccagcttttgatgaaagttttagaaatgaagtgagaatattatcagaaataaagcaccgaaa |
2321231 |
T |
|
| Q |
220 |
tattgtgaagctttatggattttgcttgcacaaaagaatcatgtttttgatctatcaatacatggagagaggaagcttattctctgtcttgta |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| || ||||| |||||||| |
|
|
| T |
2321232 |
tattgtgaagctttatggattttgcttgcacaaaagaatcatgtttttgatctaccattacatggagagaggaagtttgttctccgtcttgta |
2321324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 20 - 312
Target Start/End: Original strand, 2329530 - 2329822
Alignment:
| Q |
20 |
gacatcatcaaagcaacagaagacttcgacatgagatattgcattggaacaggagcatatggaagtgtttacaaggcacaattaccatgtggcaaggttg |
119 |
Q |
| |
|
|||||||| ||||||||||||||||| ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || |||| |
|
|
| T |
2329530 |
gacatcattaaagcaacagaagactttgacattagatattgtattggaacaggagcatatggaagtgtttacaaggcacaattaccatgtggaaaagttg |
2329629 |
T |
|
| Q |
120 |
ttgccttaaagaaacttcacggctatgaagccgaggttccatcttttgatgagagtttcagaaatgaagtgagaatattatcagaaataaagcaccgaca |
219 |
Q |
| |
|
|||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || |
|
|
| T |
2329630 |
ttgcaataaagaaacttcacggctatgaagcagaggttccatcttttgatgagagtttcagaaatgaagtgagaatattatcagatataaagcaccggca |
2329729 |
T |
|
| Q |
220 |
tattgtgaagctttatggattttgcttgcacaaaagaatcatgtttttgatctatcaatacatggagagaggaagcttattctctgtcttgta |
312 |
Q |
| |
|
||| ||||||||||||||||| || | |||| ||||||||||||||||||||| | |||||||||| ||| ||||| |||||||||||||| |
|
|
| T |
2329730 |
tatcgtgaagctttatggattctgtctccacagaagaatcatgtttttgatctacgagtacatggagaaaggtagcttgttctctgtcttgta |
2329822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 20 - 312
Target Start/End: Original strand, 2337429 - 2337721
Alignment:
| Q |
20 |
gacatcatcaaagcaacagaagacttcgacatgagatattgcattggaacaggagcatatggaagtgtttacaaggcacaattaccatgtggcaaggttg |
119 |
Q |
| |
|
||||| || ||||||||||||||||| ||||| |||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| || |||| |
|
|
| T |
2337429 |
gacattattaaagcaacagaagactttgacattagatattgcattgggacaggagcatatggaagtgtttataaggcacaattaccatgtggaaaagttg |
2337528 |
T |
|
| Q |
120 |
ttgccttaaagaaacttcacggctatgaagccgaggttccatcttttgatgagagtttcagaaatgaagtgagaatattatcagaaataaagcaccgaca |
219 |
Q |
| |
|
|||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||| |
|
|
| T |
2337529 |
ttgcaataaagaaacttcacggctatgaagcagaggttccatcttttgatgagagtttcagaaatgaagtgaaaatattatcagatataaagcaccgaca |
2337628 |
T |
|
| Q |
220 |
tattgtgaagctttatggattttgcttgcacaaaagaatcatgtttttgatctatcaatacatggagagaggaagcttattctctgtcttgta |
312 |
Q |
| |
|
||| ||||||||||||||||| || | |||| ||||||||||||||||||||| | |||||||||| ||| ||||| ||||||| |||||| |
|
|
| T |
2337629 |
tatcgtgaagctttatggattctgtctccacagaagaatcatgtttttgatctacgagtacatggagaaaggtagcttgttctctggcttgta |
2337721 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 151; E-Value: 7e-80
Query Start/End: Original strand, 20 - 310
Target Start/End: Complemental strand, 3955782 - 3955492
Alignment:
| Q |
20 |
gacatcatcaaagcaacagaagacttcgacatgagatattgcattggaacaggagcatatggaagtgtttacaaggcacaattaccatgtggcaaggttg |
119 |
Q |
| |
|
|||||||| | ||||||| ||||||| ||||| | |||||||||||||| ||||||||||||||||||||||||||||||||||||| |||| || ||| |
|
|
| T |
3955782 |
gacatcattagagcaacaaaagactttgacattaaatattgcattggaaaaggagcatatggaagtgtttacaaggcacaattaccaagtggtaaatttg |
3955683 |
T |
|
| Q |
120 |
ttgccttaaagaaacttcacggctatgaagccgaggttccatcttttgatgagagtttcagaaatgaagtgagaatattatcagaaataaagcaccgaca |
219 |
Q |
| |
|
|||| |||| |||||||| |||| ||||| ||||| |||||| ||||||| ||||| ||||||||||||| |||||||||||||||||||||| || | |
|
|
| T |
3955682 |
ttgcactaaaaaaacttcatagctacgaagcagaggtgccatctcttgatgaaagttttagaaatgaagtgaaaatattatcagaaataaagcacagaaa |
3955583 |
T |
|
| Q |
220 |
tattgtgaagctttatggattttgcttgcacaaaagaatcatgtttttgatctatcaatacatggagagaggaagcttattctctgtcttg |
310 |
Q |
| |
|
|||||||||||||||||||||||| ||||| |||||| | ||||||||||||||||| || ||||| | ||||||||| ||||| |||||| |
|
|
| T |
3955582 |
tattgtgaagctttatggattttgtttgcataaaagagttatgtttttgatctatcagtatatggaaaaaggaagcttgttctccgtcttg |
3955492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 129; E-Value: 9e-67
Query Start/End: Original strand, 20 - 280
Target Start/End: Complemental strand, 9532375 - 9532115
Alignment:
| Q |
20 |
gacatcatcaaagcaacagaagacttcgacatgagatattgcattggaacaggagcatatggaagtgtttacaaggcacaattaccatgtggcaaggttg |
119 |
Q |
| |
|
||||| || ||||||| | || |||| ||||| ||||||||||| | |||||||||||||||||||| |||||| | ||||||||||||| ||| |||| |
|
|
| T |
9532375 |
gacattattaaagcaatacaacactttgacattagatattgcatatggacaggagcatatggaagtgtatacaagactcaattaccatgtgacaaagttg |
9532276 |
T |
|
| Q |
120 |
ttgccttaaagaaacttcacggctatgaagccgaggttccatcttttgatgagagtttcagaaatgaagtgagaatattatcagaaataaagcaccgaca |
219 |
Q |
| |
|
| |||||||||||||||||| ||||||||| ||||| ||||||||||||| |||||||| |||||||| ||||||||||| | ||||||| ||| | | |
|
|
| T |
9532275 |
tcgccttaaagaaacttcacatctatgaagcagaggtgccatcttttgatgcgagtttcaaaaatgaagcgagaatattataaaaaataaatcacataaa |
9532176 |
T |
|
| Q |
220 |
tattgtgaagctttatggattttgcttgcacaaaagaatcatgtttttgatctatcaatac |
280 |
Q |
| |
|
|||||| |||||||||||||| || ||| |||||||||||||||||||||||||||||||| |
|
|
| T |
9532175 |
tattgttaagctttatggattatgattgtacaaaagaatcatgtttttgatctatcaatac |
9532115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #13
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 20 - 280
Target Start/End: Original strand, 30792145 - 30792406
Alignment:
| Q |
20 |
gacatcatcaaagcaacagaagacttcgacatgagatattgcattggaacaggagcatatggaagtgtttacaaggcacaattaccatgtggcaaggttg |
119 |
Q |
| |
|
||||| || ||||||||| || |||| ||||| ||||||| ||| | ||| ||| | ||| |||||| |||||| | || ||| |||||||||| |||| |
|
|
| T |
30792145 |
gacattattaaagcaacataacactttgacattagatattacatcgagacatgaggacatgaaagtgtatacaagactcatttatcatgtggcaaagttg |
30792244 |
T |
|
| Q |
120 |
ttgccttaaagaaacttcacggctatgaagccgaggttccatcttttgatgagagtttcagaaatgaagtgagaatattatcagaaataaagcaccgaca |
219 |
Q |
| |
|
|||||||| ||||||||||| ||||||| | | || ||||||||| | ||||||| |||||||||||||||||||||| ||||||||||| | | |
|
|
| T |
30792245 |
ttgccttatagaaacttcacaactatgaaacaaatgtgtcatcttttgttacaagtttcataaatgaagtgagaatattatcataaataaagcacataaa |
30792344 |
T |
|
| Q |
220 |
tattgtgaagctttatggattttgcttgcac-aaaagaatcatgtttttgatctatcaatac |
280 |
Q |
| |
|
|||||| ||||||||| |||| ||||||||| ||||||||| |||||||||||||||||||| |
|
|
| T |
30792345 |
tattgttaagctttatagattctgcttgcacaaaaagaatcgtgtttttgatctatcaatac |
30792406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0491 (Bit Score: 261; Significance: 1e-145; HSPs: 2)
Name: scaffold0491
Description:
Target: scaffold0491; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 20 - 312
Target Start/End: Complemental strand, 1440 - 1148
Alignment:
| Q |
20 |
gacatcatcaaagcaacagaagacttcgacatgagatattgcattggaacaggagcatatggaagtgtttacaaggcacaattaccatgtggcaaggttg |
119 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
1440 |
gacatcatcaaagcaacagaagactttgacatgagatattgcattggaacaggagcatatggaagtgtttacaaggcacaattaccaagtggcaaggttg |
1341 |
T |
|
| Q |
120 |
ttgccttaaagaaacttcacggctatgaagccgaggttccatcttttgatgagagtttcagaaatgaagtgagaatattatcagaaataaagcaccgaca |
219 |
Q |
| |
|
|||||||||||||||||||| |||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1340 |
ttgccttaaagaaacttcaccgctatgaagcagaggttccatcttttgatgatagtttcagaaatgaagtgagaatattatcagaaataaagcaccgaca |
1241 |
T |
|
| Q |
220 |
tattgtgaagctttatggattttgcttgcacaaaagaatcatgtttttgatctatcaatacatggagagaggaagcttattctctgtcttgta |
312 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| |
|
|
| T |
1240 |
tattgtgaagctttatggattctgcttgcacaaaagaatcatgtttttgatctatcaatacatggagaaaggaagcttgttctctgtcttgta |
1148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0491; HSP #2
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 20 - 312
Target Start/End: Complemental strand, 6327 - 6035
Alignment:
| Q |
20 |
gacatcatcaaagcaacagaagacttcgacatgagatattgcattggaacaggagcatatggaagtgtttacaaggcacaattaccatgtggcaaggttg |
119 |
Q |
| |
|
||||| |||||||| ||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
6327 |
gacataatcaaagcgacagaagactttgacatgagatattgtattggaacaggagcatatggaagtgtttacaaggcacaattaccaagtggcaaggttg |
6228 |
T |
|
| Q |
120 |
ttgccttaaagaaacttcacggctatgaagccgaggttccatcttttgatgagagtttcagaaatgaagtgagaatattatcagaaataaagcaccgaca |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| ||| |
|
|
| T |
6227 |
ttgccttaaagaaacttcacggctatgaagcagaggttccatcttttgatgagagtttcagaaatgaagtgagaattttaacagaaataaagcacaaaca |
6128 |
T |
|
| Q |
220 |
tattgtgaagctttatggattttgcttgcacaaaagaatcatgtttttgatctatcaatacatggagagaggaagcttattctctgtcttgta |
312 |
Q |
| |
|
||| |||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
6127 |
tatcgtgaagctttatggtttctgcttgcacaaaagaatcatgtttttgatctatcaatacatggatagaggaagcttattctctgtcttgta |
6035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 261; Significance: 1e-145; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 20 - 312
Target Start/End: Complemental strand, 18739561 - 18739269
Alignment:
| Q |
20 |
gacatcatcaaagcaacagaagacttcgacatgagatattgcattggaacaggagcatatggaagtgtttacaaggcacaattaccatgtggcaaggttg |
119 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
18739561 |
gacatcatcaaagcaacagaagactttgacatgagatattgcattggaacaggagcatatggaagtgtttacaaggcacaattaccaagtggcaaggttg |
18739462 |
T |
|
| Q |
120 |
ttgccttaaagaaacttcacggctatgaagccgaggttccatcttttgatgagagtttcagaaatgaagtgagaatattatcagaaataaagcaccgaca |
219 |
Q |
| |
|
|||||||||||||||||||| |||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18739461 |
ttgccttaaagaaacttcaccgctatgaagcagaggttccatcttttgatgatagtttcagaaatgaagtgagaatattatcagaaataaagcaccgaca |
18739362 |
T |
|
| Q |
220 |
tattgtgaagctttatggattttgcttgcacaaaagaatcatgtttttgatctatcaatacatggagagaggaagcttattctctgtcttgta |
312 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| |
|
|
| T |
18739361 |
tattgtgaagctttatggattctgcttgcacaaaagaatcatgtttttgatctatcaatacatggagaaaggaagcttgttctctgtcttgta |
18739269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 20 - 312
Target Start/End: Complemental strand, 18744525 - 18744233
Alignment:
| Q |
20 |
gacatcatcaaagcaacagaagacttcgacatgagatattgcattggaacaggagcatatggaagtgtttacaaggcacaattaccatgtggcaaggttg |
119 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
18744525 |
gacatcatcaaagcaacagaagactttgacatgagatattgcattggaacaggagcatatggaagtgtttacaaggcacaattaccaagtggcaaggttg |
18744426 |
T |
|
| Q |
120 |
ttgccttaaagaaacttcacggctatgaagccgaggttccatcttttgatgagagtttcagaaatgaagtgagaatattatcagaaataaagcaccgaca |
219 |
Q |
| |
|
|||||||||||||||||||| |||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18744425 |
ttgccttaaagaaacttcaccgctatgaagcagaggttccatcttttgatgatagtttcagaaatgaagtgagaatattatcagaaataaagcaccgaca |
18744326 |
T |
|
| Q |
220 |
tattgtgaagctttatggattttgcttgcacaaaagaatcatgtttttgatctatcaatacatggagagaggaagcttattctctgtcttgta |
312 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| |
|
|
| T |
18744325 |
tattgtgaagctttatggattctgcttgcacaaaagaatcatgtttttgatctatcaatacatggagaaaggaagcttgttctctgtcttgta |
18744233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 20 - 312
Target Start/End: Complemental strand, 18749486 - 18749194
Alignment:
| Q |
20 |
gacatcatcaaagcaacagaagacttcgacatgagatattgcattggaacaggagcatatggaagtgtttacaaggcacaattaccatgtggcaaggttg |
119 |
Q |
| |
|
||||| |||||||| ||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
18749486 |
gacataatcaaagcgacagaagactttgacatgagatattgtattggaacaggagcatatggaagtgtttacaaggcacaattaccaagtggcaaggttg |
18749387 |
T |
|
| Q |
120 |
ttgccttaaagaaacttcacggctatgaagccgaggttccatcttttgatgagagtttcagaaatgaagtgagaatattatcagaaataaagcaccgaca |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| ||| |
|
|
| T |
18749386 |
ttgccttaaagaaacttcacggctatgaagcagaggttccatcttttgatgagagtttcagaaatgaagtgagaattttaacagaaataaagcacaaaca |
18749287 |
T |
|
| Q |
220 |
tattgtgaagctttatggattttgcttgcacaaaagaatcatgtttttgatctatcaatacatggagagaggaagcttattctctgtcttgta |
312 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
18749286 |
tattgtgaagctttatggattctgcttgcacaaaagaatcatgtttttgatctatcaatacatggatagaggaagcttattctctgtcttgta |
18749194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 20 - 312
Target Start/End: Complemental strand, 18723834 - 18723542
Alignment:
| Q |
20 |
gacatcatcaaagcaacagaagacttcgacatgagatattgcattggaacaggagcatatggaagtgtttacaaggcacaattaccatgtggcaaggttg |
119 |
Q |
| |
|
||||| |||||||| ||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
18723834 |
gacataatcaaagcgacagaagactttgacatgagatattgtattggaacaggagcatatggaagtgtttacaaggcacaattaccaagtggcaaggttg |
18723735 |
T |
|
| Q |
120 |
ttgccttaaagaaacttcacggctatgaagccgaggttccatcttttgatgagagtttcagaaatgaagtgagaatattatcagaaataaagcaccgaca |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| ||| |
|
|
| T |
18723734 |
ttgccttaaagaaacttcacggctatgaagcagaggttccatcttttgatgagagtttcagaaatgaagtgagaattttaacagaaataaagcacaaaca |
18723635 |
T |
|
| Q |
220 |
tattgtgaagctttatggattttgcttgcacaaaagaatcatgtttttgatctatcaatacatggagagaggaagcttattctctgtcttgta |
312 |
Q |
| |
|
||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
18723634 |
tatagtgaagctttatggattctgcttgcacaaaagaatcatgtttttgatctatcaatacatggatagaggaagcttattctctgtcttgta |
18723542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 162 - 211
Target Start/End: Complemental strand, 18733045 - 18732996
Alignment:
| Q |
162 |
cttttgatgagagtttcagaaatgaagtgagaatattatcagaaataaag |
211 |
Q |
| |
|
|||||||| ||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
18733045 |
cttttgattagagttttagaaatgaagtgagaatattatcagaaataaag |
18732996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 114; Significance: 8e-58; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 42 - 283
Target Start/End: Complemental strand, 42978019 - 42977778
Alignment:
| Q |
42 |
acttcgacatgagatattgcattggaacaggagcatatggaagtgtttacaaggcacaattaccatgtggcaaggttgttgccttaaagaaacttcacgg |
141 |
Q |
| |
|
|||| ||||| ||||||||||| | ||| ||||||||||||||| |||||| | |||||| |||||||||| ||| ||||||||||||||||| |
|
|
| T |
42978019 |
actttgacattagatattgcatcgtgacataagcatatggaagtgtatacaagactcaattatcatgtggcaaatttgccaccttaaagaaacttcacaa |
42977920 |
T |
|
| Q |
142 |
ctatgaagccgaggttccatcttttgatgagagtttcagaaatgaagtgagaatattatcagaaataaagcaccgacatattgtgaagctttatggattt |
241 |
Q |
| |
|
||||||||| || || |||||||||||| || |||||||| ||||||||||||||||||| |||||||||| | ||||||| ||||||||||||||| |
|
|
| T |
42977919 |
ctatgaagcagatgtgtcatcttttgatgcgaatttcagaattgaagtgagaatattatcaaaaataaagcagataaatattgttaagctttatggattt |
42977820 |
T |
|
| Q |
242 |
tgcttgcacaaaagaatcatgtttttgatctatcaatacatg |
283 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
42977819 |
tgcttgcacaaaagaatcatgtttttaatctatcaatacatg |
42977778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 42 - 283
Target Start/End: Original strand, 54122784 - 54123025
Alignment:
| Q |
42 |
acttcgacatgagatattgcattggaacaggagcatatggaagtgtttacaaggcacaattaccatgtggcaaggttgttgccttaaagaaacttcacgg |
141 |
Q |
| |
|
|||| ||||| ||||||||||| | ||| ||||||||||||||| |||||| | |||||| |||||||||| ||| ||||||||||||||||| |
|
|
| T |
54122784 |
actttgacattagatattgcatcgtgacataagcatatggaagtgtatacaagactcaattatcatgtggcaaatttgccaccttaaagaaacttcacaa |
54122883 |
T |
|
| Q |
142 |
ctatgaagccgaggttccatcttttgatgagagtttcagaaatgaagtgagaatattatcagaaataaagcaccgacatattgtgaagctttatggattt |
241 |
Q |
| |
|
||||||||| || || |||||||||||| |||||||| || ||||||||||||||||| | |||||||||| | |||| | ||||||||| |||| |
|
|
| T |
54122884 |
ctatgaagcagatgtgtcatcttttgatgtgagtttcacaattgaagtgagaatattataaaaaataaagcagataaatatctttaagctttatatattt |
54122983 |
T |
|
| Q |
242 |
tgcttgcacaaaagaatcatgtttttgatctatcaatacatg |
283 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
54122984 |
tgcttgcacaaaagaatcatgtttttaatctatcaatacatg |
54123025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 42 - 283
Target Start/End: Complemental strand, 48712677 - 48712437
Alignment:
| Q |
42 |
acttcgacatgagatattgcattggaacaggagcatatggaagtgtttacaaggcacaattaccatgtggcaaggttgttgccttaaagaaacttcacgg |
141 |
Q |
| |
|
|||| ||||| ||||||||||| | ||| ||||||||||||||| |||||| | |||||| |||||||||| ||| ||||||||||||||||| |
|
|
| T |
48712677 |
actttgacattagatattgcatcgtgacataagcatatggaagtgtatacaagactcaattatcatgtggcaaatttgccaccttaaagaaacttcacaa |
48712578 |
T |
|
| Q |
142 |
ctatgaagccgaggttccatcttttgatgagagtttcagaaatgaagtgagaatattatcagaaataaagcaccgacatattgtgaagctttatggattt |
241 |
Q |
| |
|
|||| |||| || || | |||||||||| || |||||||| ||||||||||||||||||| ||||||| || | ||||||| ||||||||||||||| |
|
|
| T |
48712577 |
ctattaagcagatgtgtcttcttttgatgcgattttcagaattgaagtgagaatattatcaaaaataaa-cagataaatattgttaagctttatggattt |
48712479 |
T |
|
| Q |
242 |
tgcttgcacaaaagaatcatgtttttgatctatcaatacatg |
283 |
Q |
| |
|
|||||||||||||||||||| |||| ||||||||||||||| |
|
|
| T |
48712478 |
tgcttgcacaaaagaatcatattttcaatctatcaatacatg |
48712437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 18 - 214
Target Start/End: Original strand, 16880134 - 16880331
Alignment:
| Q |
18 |
tggacatcatcaaagcaacagaagacttcgacatgagatattgcattggaacaggagcatatggaagtgtttacaaggcacaattaccatgtggcaaggt |
117 |
Q |
| |
|
||||||| || |||| |||| || |||| ||||| ||||||||||| || ||| |||||||||||||||| |||||| | | |||||||| | |||| || |
|
|
| T |
16880134 |
tggacattattaaagaaacacaacactttgacattagatattgcatcggcacaagagcatatggaagtgtatacaagactcgattaccatcttgcaaagt |
16880233 |
T |
|
| Q |
118 |
tgttgccttaaagaaacttcacggctatgaagccgaggttccatcttttgatgagagtttcagaaatgaa-gtgagaatattatcagaaataaagcac |
214 |
Q |
| |
|
|| |||||||||||| ||||| |||||||| | || |||||||||||| |||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
16880234 |
tgccgccttaaagaaatttcacaactatgaagtaaaagtgtcatcttttgatgcgagtttcagaaatgaatgtgagaatattatcagaaataaagcac |
16880331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 112; Significance: 1e-56; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 20 - 283
Target Start/End: Original strand, 19250247 - 19250510
Alignment:
| Q |
20 |
gacatcatcaaagcaacagaagacttcgacatgagatattgcattggaacaggagcatatggaagtgtttacaaggcacaattaccatgtggcaaggttg |
119 |
Q |
| |
|
||||| || ||||||||| || |||| ||||| ||||||||||| |||||| |||||| |||||| |||||| | | |||||||||||| || |||| |
|
|
| T |
19250247 |
gacattattaaagcaacacaacactttgacattagatattgcatcatgacaggatcatatgaaagtgtatacaagactcgattaccatgtggtaaagttg |
19250346 |
T |
|
| Q |
120 |
ttgccttaaagaaacttcacggctatgaagccgaggttccatcttttgatgagagtttcagaaatgaagtgagaatattatcagaaataaagcaccgaca |
219 |
Q |
| |
|
| || ||||||||| ||||| |||||||| || || || |||||||||| ||||||||||| ||||||||||||||||||| | ||||| ||| | | |
|
|
| T |
19250347 |
tcgctttaaagaaatttcacaactatgaagtagatgtgccgtcttttgatgcgagtttcagaattgaagtgagaatattatcatatataaaacacataaa |
19250446 |
T |
|
| Q |
220 |
tattgtgaagctttatggattttgcttgcacaaaagaatcatgtttttgatctatcaatacatg |
283 |
Q |
| |
|
|||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19250447 |
tattgttaagctttatggattctgcttgcacaaaagaatcatgtttttgatctatcaatacatg |
19250510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 42 - 283
Target Start/End: Complemental strand, 41669093 - 41668852
Alignment:
| Q |
42 |
acttcgacatgagatattgcattggaacaggagcatatggaagtgtttacaaggcacaattaccatgtggcaaggttgttgccttaaagaaacttcacgg |
141 |
Q |
| |
|
|||| ||||| ||||||||||| | ||| ||||||||||||||| |||||| | |||||| |||||||||| ||| ||||||||||||||||| |
|
|
| T |
41669093 |
actttgacattagatattgcatcgtgacataagcatatggaagtgtatacaagactcaattatcatgtggcaaatttgccaccttaaagaaacttcacaa |
41668994 |
T |
|
| Q |
142 |
ctatgaagccgaggttccatcttttgatgagagtttcagaaatgaagtgagaatattatcagaaataaagcaccgacatattgtgaagctttatggattt |
241 |
Q |
| |
|
||||||||| || || |||||||||||| ||||||||||| |||||||| |||||||| | |||||||||| | ||||||| ||||||||||||||| |
|
|
| T |
41668993 |
ctatgaagcagatgtgtcatcttttgatgtgagtttcagaattgaagtgaaaatattataaaaaataaagcagataaatattgttaagctttatggattt |
41668894 |
T |
|
| Q |
242 |
tgcttgcacaaaagaatcatgtttttgatctatcaatacatg |
283 |
Q |
| |
|
||||||||||||||||| |||||||| ||||||| ||||||| |
|
|
| T |
41668893 |
tgcttgcacaaaagaataatgtttttaatctatcgatacatg |
41668852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 102; Significance: 1e-50; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 73 - 312
Target Start/End: Original strand, 36620505 - 36620741
Alignment:
| Q |
73 |
agcatatggaagtgtttacaaggcacaattaccatgtggcaaggttgttgccttaaagaaacttcacggctatgaagccgaggttccatcttttgatgag |
172 |
Q |
| |
|
||||||||||||| | |||||| | |||||| |||||||||| ||| ||||||||||||||||| |||| |||| || || ||||||||||| | |
|
|
| T |
36620505 |
agcatatggaagtttatacaagactcaattatcatgtggcaaatttgccaccttaaagaaacttcacaactattaagcagatgt---atcttttgatgcg |
36620601 |
T |
|
| Q |
173 |
agtttcagaaatgaagtgagaatattatcagaaataaagcaccgacatattgtgaagctttatggattttgcttgcacaaaagaatcatgtttttgatct |
272 |
Q |
| |
|
|||||||||| ||||||||||||||||||| |||||||||| | ||||||| ||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
36620602 |
agtttcagaattgaagtgagaatattatcaaaaataaagcagataaatattgttaagctttatggattttgcttgcacaaaagaatcatgtttttaatct |
36620701 |
T |
|
| Q |
273 |
atcaatacatggagagaggaagcttattctctgtcttgta |
312 |
Q |
| |
|
||||||||||| | |||| ||| || ||||| || ||||| |
|
|
| T |
36620702 |
atcaatacatgaaaagagaaagtttgttctcggttttgta |
36620741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 42 - 283
Target Start/End: Complemental strand, 8873340 - 8873098
Alignment:
| Q |
42 |
acttcgacatgagatattgcattggaacaggagcatatggaagtgtttacaaggcacaattaccatgtggcaaggttgttgccttaaagaaacttcacgg |
141 |
Q |
| |
|
|||| ||||| ||||||||||| | ||| ||||||||||||||| |||||| | |||||| |||||||||| ||| ||||||||||||||||| |
|
|
| T |
8873340 |
actttgacattagatattgcatcgtgacataagcatatggaagtgtatacaagactcaattatcatgtggcaaatttgcgaccttaaagaaacttcacaa |
8873241 |
T |
|
| Q |
142 |
ctatgaagccgaggttccatcttttgatgagagtttcagaaatgaagtgagaatattatcagaaataaagcaccgacatattgtgaagctttatgga-tt |
240 |
Q |
| |
|
||||||||| || || |||| ||||||| |||||||||| ||||||||||||||||| | |||||||||| | ||||| | |||||||||||| || |
|
|
| T |
8873240 |
ctatgaagcagatgtgtcatcgtttgatgccagtttcagaattgaagtgagaatattataaaaaataaagcagataaatattattaagctttatggattt |
8873141 |
T |
|
| Q |
241 |
ttgcttgcacaaaagaatcatgtttttgatctatcaatacatg |
283 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
8873140 |
ttgcttgcacaaaagaatcatgtttttaatctatcaatacatg |
8873098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 73 - 312
Target Start/End: Complemental strand, 39102501 - 39102263
Alignment:
| Q |
73 |
agcatatggaagtgtttacaaggcacaattaccatgtggcaaggttgttgccttaaagaaacttcacggctatgaagccgaggttccatcttttgatgag |
172 |
Q |
| |
|
||||||||||||| | |||||| | |||||| |||||||||| ||| |||||||||| |||||| |||| |||| || || |||||||||||| | |
|
|
| T |
39102501 |
agcatatggaagtttatacaagactcaattatcatgtggcaaatttgcctccttaaagaa-cttcacaactattaagcagatgtgtcatcttttgatgcg |
39102403 |
T |
|
| Q |
173 |
agtttcagaaatgaagtgagaatattatcagaaataaagcaccgacatattgtgaagctttatggattttgcttgcacaaaagaatcatgtttttgatct |
272 |
Q |
| |
|
||||| |||| ||||||||||||||||||| |||||||||| | ||||||| ||||||||||||||||||||||||||||||| ||||||||| || | |
|
|
| T |
39102402 |
agttttagaattgaagtgagaatattatcaaaaataaagcagataaatattgttaagctttatggattttgcttgcacaaaagaagcatgtttttaatat |
39102303 |
T |
|
| Q |
273 |
atcaatacatggagagaggaagcttattctctgtcttgta |
312 |
Q |
| |
|
||||||||||| | |||| ||| || ||||| || ||||| |
|
|
| T |
39102302 |
atcaatacatgaaaagagaaagtttgttctcggttttgta |
39102263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 102; Significance: 1e-50; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 42 - 283
Target Start/End: Original strand, 31657883 - 31658124
Alignment:
| Q |
42 |
acttcgacatgagatattgcattggaacaggagcatatggaagtgtttacaaggcacaattaccatgtggcaaggttgttgccttaaagaaacttcacgg |
141 |
Q |
| |
|
|||| ||||| ||||||||||| | ||| |||| |||||||||| |||||| | |||||| |||||||||| |||| ||||||||||||||||| |
|
|
| T |
31657883 |
actttgacattagatattgcatcgtgacataagcacatggaagtgtatacaagactcaattatcatgtggcaaatttgtcaccttaaagaaacttcacaa |
31657982 |
T |
|
| Q |
142 |
ctatgaagccgaggttccatcttttgatgagagtttcagaaatgaagtgagaatattatcagaaataaagcaccgacatattgtgaagctttatggattt |
241 |
Q |
| |
|
||| ||| || || |||||||||||| || |||||||| ||||||||||||||||||| |||||||||| | ||||||| ||||||||||||||| |
|
|
| T |
31657983 |
ctacgaaatagatgtgtcatcttttgatgcgaatttcagaattgaagtgagaatattatcaaaaataaagcagataaatattgttaagctttatggattt |
31658082 |
T |
|
| Q |
242 |
tgcttgcacaaaagaatcatgtttttgatctatcaatacatg |
283 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
31658083 |
tgcttgcacaaaagaatcatgtttttaatctatcaatacatg |
31658124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 90; Significance: 2e-43; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 42 - 283
Target Start/End: Original strand, 1257677 - 1257918
Alignment:
| Q |
42 |
acttcgacatgagatattgcattggaacaggagcatatggaagtgtttacaaggcacaattaccatgtggcaaggttgttgccttaaagaaacttcacgg |
141 |
Q |
| |
|
|||| ||||| ||||||||||| | ||| |||||||| |||||| |||||| | |||||| |||||||| | ||| ||||||||||||||||| |
|
|
| T |
1257677 |
actttgacattagatattgcatcgtgacataagcatatgaaagtgtatacaagactcaattatcatgtggccaatttgccaccttaaagaaacttcacaa |
1257776 |
T |
|
| Q |
142 |
ctatgaagccgaggttccatcttttgatgagagtttcagaaatgaagtgagaatattatcagaaataaagcaccgacatattgtgaagctttatggattt |
241 |
Q |
| |
|
|||||||| || || ||| |||||||| ||||||||||| ||||||||||||||||||| |||||||||| | ||||||| || ||||||| |||| |
|
|
| T |
1257777 |
atatgaagcagatgtgtcattttttgatgcgagtttcagaattgaagtgagaatattatcaaaaataaagcagataaatattgttaaactttatgaattt |
1257876 |
T |
|
| Q |
242 |
tgcttgcacaaaagaatcatgtttttgatctatcaatacatg |
283 |
Q |
| |
|
|| ||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
1257877 |
tgtttgcacaaaagaatcatgtttttaatctatcaatacatg |
1257918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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