View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17710_high_9 (Length: 371)
Name: NF17710_high_9
Description: NF17710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17710_high_9 |
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| [»] chr6 (3 HSPs) |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 208; Significance: 1e-114; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 20 - 371
Target Start/End: Complemental strand, 17075755 - 17075404
Alignment:
| Q |
20 |
gacatcatcaatcacaaccttctcattcccatgcacagccacccaattaacccaatcactgttaactgaccccgacgaggaactaccatccgaaactccc |
119 |
Q |
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||||||||||| ||||||||||||||| |||||||| ||||||||||||||||||||| ||||||| |||||||| || ||||||||||||||| ||||| |
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| T |
17075755 |
gacatcatcaaacacaaccttctcatttccatgcactgccacccaattaacccaatcattgttaacggaccccgatgacgaactaccatccgaagctccc |
17075656 |
T |
|
| Q |
120 |
gaggaaaccacccttatcgcctttttaagacgatccgaaccttgtaattttctcgatttagattttaaaatatgtaaaacggtggaacgatctttactag |
219 |
Q |
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|| |||||||| ||| |||||||||||| || ||||| ||||||||||||||| ||||||||||||| || |||||||| | |||||||||||| |||| |
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| T |
17075655 |
gaagaaaccacttttaccgcctttttaaggcgttccgagccttgtaattttctcaatttagattttaagatgtgtaaaactgaggaacgatctttgctag |
17075556 |
T |
|
| Q |
220 |
gcaaccgcgccaccttcttcaaactaatcaccgagtgccgcaagatcccattcactttcttcctcttattaacgatggaactgggttttgcactaggcca |
319 |
Q |
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||| |||||||||||| |||| ||||||||||||||| ||||| || || ||||||||||||| ||| |||||||||| ||||| || |||| | |||| |
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| T |
17075555 |
gcagccgcgccacctttttcagactaatcaccgagtgtcgcaaaattccgttcactttcttccgcttgttaacgatggtactggattgtgcaatgggccg |
17075456 |
T |
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| Q |
320 |
caccactttcttaaccttcttccttgccgaagaaataacaccagcgtcacca |
371 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17075455 |
caccactttcttaaccttcttccttgccgaagaaataacaccagcgtcacca |
17075404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 147 - 371
Target Start/End: Complemental strand, 11053702 - 11053478
Alignment:
| Q |
147 |
agacgatccgaaccttgtaattttctcgatttagattttaaaatatgtaaaacggtggaacgatctttactaggcaaccgcgccaccttcttcaaactaa |
246 |
Q |
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||||| || |||||||||||||| ||||||||||||||||| |||||||||| |||||| |||||||| |||||||||||||||||||| |||||||||| |
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| T |
11053702 |
agacggtctgaaccttgtaatttcctcgatttagattttaagatatgtaaaatggtggaccgatctttgctaggcaaccgcgccacctttttcaaactaa |
11053603 |
T |
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| Q |
247 |
tcaccgagtgccgcaagatcccattcactttcttcctcttattaacgatggaactgggttttgcactaggccacaccactttcttaaccttcttccttgc |
346 |
Q |
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||||||||||||||| | ||||||||||||||||| || || | | || || || ||| |||||| ||||||||||||||||||||| ||||| |
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| T |
11053602 |
tcaccgagtgccgcagaaccccattcactttcttccgattgtttgcacagataccggattgggcaataggccgcaccactttcttaaccttctttcttgc |
11053503 |
T |
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| Q |
347 |
cgaagaaataacaccagcgtcacca |
371 |
Q |
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||| ||||||||||||||||||||| |
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| T |
11053502 |
cgatgaaataacaccagcgtcacca |
11053478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 21 - 151
Target Start/End: Complemental strand, 11064166 - 11064036
Alignment:
| Q |
21 |
acatcatcaatcacaaccttctcattcccatgcacagccacccaattaacccaatcactgttaactgaccccgacgaggaactaccatccgaaactcccg |
120 |
Q |
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|||||||||| ||| || ||||||||| ||||||| ||||||||||| ||||||||| | ||||| || ||||||||||||||||| ||||||||| ||| |
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| T |
11064166 |
acatcatcaaccactactttctcattctcatgcactgccacccaattgacccaatcattattaaccgatcccgacgaggaactaccttccgaaacttccg |
11064067 |
T |
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| Q |
121 |
aggaaaccacccttatcgcctttttaagacg |
151 |
Q |
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||||||||||| | | | ||||||||||||| |
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| T |
11064066 |
aggaaaccaccttaaccacctttttaagacg |
11064036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 170; Significance: 4e-91; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 21 - 282
Target Start/End: Original strand, 17683905 - 17684166
Alignment:
| Q |
21 |
acatcatcaatcacaaccttctcattcccatgcacagccacccaattaacccaatcactgttaactgaccccgacgaggaactaccatccgaaactcccg |
120 |
Q |
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|||||||||| | | || ||||||||||||||||| ||||||||||||||||||||| | ||||| |||| ||||||||||||||| ||||||||||||| |
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| T |
17683905 |
acatcatcaaccgctactttctcattcccatgcactgccacccaattaacccaatcattattaaccgacctcgacgaggaactaccttccgaaactcccg |
17684004 |
T |
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| Q |
121 |
aggaaaccacccttatcgcctttttaagacgatccgaaccttgtaattttctcgatttagattttaaaatatgtaaaacggtggaacgatctttactagg |
220 |
Q |
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||||||||||| ||| | ||||||||||||| || |||||||||||||| ||||||||||||||||| ||||||||||||||||| |||||||| ||||| |
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| T |
17684005 |
aggaaaccacctttaccacctttttaagacggtctgaaccttgtaatttcctcgatttagattttaagatatgtaaaacggtggaccgatctttgctagg |
17684104 |
T |
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| Q |
221 |
caaccgcgccaccttcttcaaactaatcaccgagtgccgcaagatcccattcactttcttcc |
282 |
Q |
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|||| |||||||||| |||||||||||||||||||||||||| | ||||||||||||||||| |
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| T |
17684105 |
caactgcgccacctttttcaaactaatcaccgagtgccgcaaaaccccattcactttcttcc |
17684166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 36 - 280
Target Start/End: Original strand, 36159902 - 36160146
Alignment:
| Q |
36 |
accttctcattcccatgcacagccacccaattaacccaatcactgttaactgaccccgacgaggaactaccatccgaaactcccgaggaaaccaccctta |
135 |
Q |
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||||||||||||||||||||| |||| ||||||||||||| |||||||||| | || || ||||| ||| ||| ||||||| || ||||| | | |
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| T |
36159902 |
accttctcattcccatgcacaaccacaaaattaacccaatcgttgttaactgaacatgaagaagaacttttatctgaagctcccgaagaccccaccttca |
36160001 |
T |
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| Q |
136 |
tcgcctttttaagacgatccgaaccttgtaattttctcgatttagattttaaaatatgtaaaacggtggaacgatctttactaggcaaccgcgccacctt |
235 |
Q |
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||||||||| ||||||||||| || ||||||||||| | ||||||||||| ||| || ||||| || || | ||| || | || |||| ||||| || |
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| T |
36160002 |
ccgcctttttcagacgatccgacccatgtaattttctagctttagattttagaatgtgcaaaactgttgatcaatcattggtcggtaaccttgccacttt |
36160101 |
T |
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| Q |
236 |
cttcaaactaatcaccgagtgccgcaagatcccattcactttctt |
280 |
Q |
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||||||||| ||||||| || |||||||| |||| ||||||||| |
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| T |
36160102 |
tttcaaactattcaccgaatgtcgcaagataccatccactttctt |
36160146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 313 - 371
Target Start/End: Original strand, 17684197 - 17684255
Alignment:
| Q |
313 |
taggccacaccactttcttaaccttcttccttgccgaagaaataacaccagcgtcacca |
371 |
Q |
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|||||| |||||||||| | |||||||| |||||||| ||||||||||||||||||||| |
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| T |
17684197 |
taggccgcaccactttcctgaccttctttcttgccgatgaaataacaccagcgtcacca |
17684255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 163; Significance: 6e-87; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 163; E-Value: 6e-87
Query Start/End: Original strand, 21 - 371
Target Start/End: Original strand, 26741535 - 26741885
Alignment:
| Q |
21 |
acatcatcaatcacaaccttctcattcccatgcacagccacccaattaacccaatcactgttaactgaccccgacgaggaactaccatccgaaactcccg |
120 |
Q |
| |
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|||||||||| |||||||||||||||||||||||| ||||||||||||||||||| |||||||||| ||||| || ||||||||||||||| |||||| |
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| T |
26741535 |
acatcatcaaccacaaccttctcattcccatgcacttccacccaattaacccaatcgttgttaactgaacccgaggaagaactaccatccgaagctcccg |
26741634 |
T |
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| Q |
121 |
aggaaaccacccttatcgcctttttaagacgatccgaaccttgtaattttctcgatttagattttaaaatatgtaaaacggtggaacgatctttactagg |
220 |
Q |
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| T |
26741635 |
aagaaaccacccttacagccttcttaagacgatccgatccttgtaattttctcgacttagattttaagatgtgtaaaactgtggaacgatctttgcaggg |
26741734 |
T |
|
| Q |
221 |
caaccgcgccaccttcttcaaactaatcaccgagtgccgcaagatcccattcactttcttcctcttattaacgatggaactgggttttgcactaggccac |
320 |
Q |
| |
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|| ||| ||||||| |||||||||||||||| || ||| |||||| ||||||||||||||| ||| ||||| | || || | || ||| ||||| | |
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| T |
26741735 |
cagccgatccacctttttcaaactaatcaccgggttccgtaagatctcattcactttcttccgcttgttaacaaaggtacatgattgagcaataggctgc |
26741834 |
T |
|
| Q |
321 |
accactttcttaaccttcttccttgccgaagaaataacaccagcgtcacca |
371 |
Q |
| |
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||||| |||||||||||||||| ||||| |||||||||||||| |||||| |
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| T |
26741835 |
gccactctcttaaccttcttcctagccgatgaaataacaccagcatcacca |
26741885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 157; Significance: 2e-83; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 23 - 303
Target Start/End: Complemental strand, 10560002 - 10559722
Alignment:
| Q |
23 |
atcatcaatcacaaccttctcattcccatgcacagccacccaattaacccaatcactgttaactgaccccgacgaggaactaccatccgaaactcccgag |
122 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| ||||||||||||||||||||| ||||| |||| ||||| || ||||||||||| ||| ||||||| |
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| T |
10560002 |
atcatcaactacaaccttctcattcccatgcactgccacccaattaacccaatcattgttatctgaacccgaggaagaactaccatctgaagctcccgaa |
10559903 |
T |
|
| Q |
123 |
gaaaccacccttatcgcctttttaagacgatccgaaccttgtaattttctcgatttagattttaaaatatgtaaaacggtggaacgatctttactaggca |
222 |
Q |
| |
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||||||||| ||| ||||||||| |||||||| || ||||||||||||||||||||||||||||| || |||||||||||||| ||||||| ||||||| |
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| T |
10559902 |
gaaaccacctttaccgcctttttgagacgatctgatccttgtaattttctcgatttagattttaagatgtgtaaaacggtggattgatctttgctaggca |
10559803 |
T |
|
| Q |
223 |
accgcgccaccttcttcaaactaatcaccgagtgccgcaagatcccattcactttcttcctcttattaacgatggaactgg |
303 |
Q |
| |
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| || ||||||| ||||||||||||||||||||||||| | ||||||||||||||||||||| ||||| |||| ||||| |
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| T |
10559802 |
gctgccccacctttttcaaactaatcaccgagtgccgcagaaacccattcactttcttcctcttgttaacaatggtactgg |
10559722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 308 - 371
Target Start/End: Complemental strand, 10558491 - 10558428
Alignment:
| Q |
308 |
tgcactaggccacaccactttcttaaccttcttccttgccgaagaaataacaccagcgtcacca |
371 |
Q |
| |
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|||| |||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
10558491 |
tgcaataggccgcaccactttcttaaccttctttcttgccgaagaaataacaccagcgtcacca |
10558428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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