View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17711_high_2 (Length: 517)

Name: NF17711_high_2
Description: NF17711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17711_high_2
NF17711_high_2
[»] chr4 (3 HSPs)
chr4 (10-473)||(54572725-54573183)
chr4 (373-471)||(40346019-40346117)
chr4 (373-471)||(50771575-50771673)
[»] chr6 (10 HSPs)
chr6 (373-486)||(8753137-8753250)
chr6 (176-337)||(353019-353193)
chr6 (374-471)||(32737281-32737378)
chr6 (161-233)||(14802777-14802849)
chr6 (161-239)||(31984797-31984873)
chr6 (160-241)||(12273588-12273669)
chr6 (260-326)||(14802893-14802959)
chr6 (160-215)||(807670-807725)
chr6 (373-471)||(7093692-7093790)
chr6 (176-214)||(31405733-31405771)
[»] chr7 (12 HSPs)
chr7 (373-476)||(19294489-19294592)
chr7 (373-476)||(41767979-41768082)
chr7 (121-250)||(38787029-38787158)
chr7 (373-473)||(5899964-5900063)
chr7 (373-471)||(19323994-19324092)
chr7 (373-471)||(18299681-18299779)
chr7 (373-471)||(32575239-32575337)
chr7 (176-239)||(4648282-4648345)
chr7 (373-418)||(38142009-38142054)
chr7 (284-326)||(30966665-30966707)
chr7 (373-418)||(15669461-15669506)
chr7 (373-418)||(29626683-29626728)
[»] chr8 (3 HSPs)
chr8 (373-486)||(33574320-33574433)
chr8 (160-250)||(24542657-24542747)
chr8 (164-250)||(15051516-15051602)
[»] chr1 (5 HSPs)
chr1 (111-337)||(47833759-47833996)
chr1 (147-248)||(2079112-2079213)
chr1 (373-471)||(16541111-16541209)
chr1 (373-471)||(15759727-15759825)
chr1 (160-242)||(25588693-25588774)
[»] chr2 (4 HSPs)
chr2 (120-337)||(36338882-36339113)
chr2 (120-337)||(27648308-27648538)
chr2 (161-326)||(44686118-44686295)
chr2 (251-312)||(26690565-26690624)
[»] chr3 (8 HSPs)
chr3 (164-326)||(24734249-24734423)
chr3 (383-486)||(20692299-20692402)
chr3 (164-331)||(53837482-53837662)
chr3 (160-337)||(53833878-53834068)
chr3 (160-250)||(16196750-16196840)
chr3 (178-241)||(3083783-3083846)
chr3 (373-471)||(53459143-53459241)
chr3 (179-242)||(7910318-7910381)
[»] chr5 (5 HSPs)
chr5 (165-337)||(33827499-33827684)
chr5 (148-239)||(33544976-33545068)
chr5 (373-471)||(40973507-40973605)
chr5 (165-239)||(17895633-17895707)
chr5 (373-471)||(25982414-25982512)
[»] scaffold0432 (1 HSPs)
scaffold0432 (373-471)||(8870-8968)


Alignment Details
Target: chr4 (Bit Score: 373; Significance: 0; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 10 - 473
Target Start/End: Original strand, 54572725 - 54573183
Alignment:
Q  10 gagatgaaaatggttttgagagaatacgtatgtgacaaaaggctggctacttcaatctctcttgttttctcactttcatttcttcttttcaattttggtc 109  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54572725 gagatgaacatggttttgagagaatacgtatgtgacaaaaggctggctacttcaatctctcttgttttctcactttcatttcttcttttcaattttggtc 54572824  T
Q  110 tctaataacaaataacaaatatatattaagttccca--aacatccaagagtagttcctgagactttgttaattcacgtgcggtgctagcaagatgtgact 207  Q
    ||||||||||||||       |||| ||||||||||  | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54572825 tctaataacaaata-------tatactaagttcccatgagcatccaagagtagttcctgagactttgttaattcacgtgcggtgctagcaagatgtgact 54572917  T
Q  208 gttgtatcctggagggtattagctatgagacctactgcatcggggtggtgaaatactcttaagtccagtgtttcgtgcacgcctcagtcaataatcgata 307  Q
     ||||||| ||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  54572918 tttgtatcttggagggtattagctatgagacctactgcatcgagatggtgaaatactcttaagtccagtgcttcgtgcacgcctcagtcaataatcgata 54573017  T
Q  308 agtttacttattctctattctattgtatttgtagaccgtaaaataacttctatgaagaaaaatgcttcttgtgtttgggtgatttggatcgaaagaaacg 407  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||| | |||||||||||||||||||||||| |||||||||||||||||||||||    
T  54573018 agtttacttattctctattctattgtatttgtagaccgtaaagtaacttatgtgaagaaaaatgcttcttgtgtttcggtgatttggatcgaaagaaacg 54573117  T
Q  408 ctcgggtctttaaccaaaagaaggtcactcttgatcaattactcgacaaaattaaacttcaatctt 473  Q
     ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  54573118 ttcgggtctttaaccaaaagaaggccactcttgatcaattactcgacaaaattaaacttcaatctt 54573183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 373 - 471
Target Start/End: Complemental strand, 40346117 - 40346019
Alignment:
Q  373 ttcttgtgtttgggtgatttggatcgaaagaaacgctcgggtctttaaccaaaagaaggtcactcttgatcaattactcgacaaaattaaacttcaatc 471  Q
    ||||||||| |||||||||||||| ||||||||| ||||||||||| | |||||  ||| | |  |   ||||||||| || |||||||||||||||||    
T  40346117 ttcttgtgtgtgggtgatttggatagaaagaaacactcgggtctttcatcaaaaagaggcctcgttcattcaattactagataaaattaaacttcaatc 40346019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 373 - 471
Target Start/End: Original strand, 50771575 - 50771673
Alignment:
Q  373 ttcttgtgtttgggtgatttggatcgaaagaaacgctcgggtctttaaccaaaagaaggtcactcttgatcaattactcgacaaaattaaacttcaatc 471  Q
    ||||||||| |||||||||||| | ||||||||| |||| |||||| | |||||  ||||| |  |  |||||||||| || ||||||| |||||||||    
T  50771575 ttcttgtgtgtgggtgatttggctagaaagaaacactcgagtctttcatcaaaaagaggtctcgttcaatcaattactagataaaattatacttcaatc 50771673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 102; Significance: 2e-50; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 373 - 486
Target Start/End: Complemental strand, 8753250 - 8753137
Alignment:
Q  373 ttcttgtgtttgggtgatttggatcgaaagaaacgctcgggtctttaaccaaaagaaggtcactcttgatcaattactcgacaaaattaaacttcaatct 472  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  8753250 ttcttgtgtttgggtgatctggatcgaaagaaacgctcgggtctttaaccaaaagaaggccactcttgatcaattactcgacaaaattaaacttcaatct 8753151  T
Q  473 ttctcgtggttgaa 486  Q
    |||| |||||||||    
T  8753150 ttctggtggttgaa 8753137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 176 - 337
Target Start/End: Original strand, 353019 - 353193
Alignment:
Q  176 taattcacgtgcggtgctagcaagatgtgactgttgtatcctggagggtattagctatgagacctactgcatcgg-------------ggtggtgaaata 262  Q
    ||||||||||||| | ||||||||| |||| | ||||||||||||| ||||||||| |||||||||  |||||||             ||||| ||||||    
T  353019 taattcacgtgcgatactagcaagaagtgattattgtatcctggagagtattagctgtgagacctatcgcatcggataatctattcggggtggcgaaata 353118  T
Q  263 ctcttaagtccagtgtttcgtgcacgcctcagtcaataatcgataagtttacttattctctattctattgtattt 337  Q
    |||||||| |||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  353119 ctcttaagcccagtgcttcgtgcacgcctcagtcaataatcgatgagtttacttattctctattctattgtattt 353193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 374 - 471
Target Start/End: Complemental strand, 32737378 - 32737281
Alignment:
Q  374 tcttgtgtttgggtgatttggatcgaaagaaacgctcgggtctttaaccaaaagaaggtcactcttgatcaattactcgacaaaattaaacttcaatc 471  Q
    |||||||| || ||||||||||| ||||||||||||||||||||| |||||||| |||   | |||||||||||||||||||||  ||||||||||||    
T  32737378 tcttgtgtgtgagtgatttggattgaaagaaacgctcgggtctttcaccaaaaggaggcatcacttgatcaattactcgacaaaggtaaacttcaatc 32737281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 161 - 233
Target Start/End: Original strand, 14802777 - 14802849
Alignment:
Q  161 ttcctgagactttgttaattcacgtgcggtgctagcaagatgtgactgttgtatcctggagggtattagctat 233  Q
    ||||||| || ||| |||||||||||| |||||||||||| |||  ||||||||||||||| |||||||||||    
T  14802777 ttcctgaaaccttgctaattcacgtgcagtgctagcaagaagtggttgttgtatcctggagagtattagctat 14802849  T

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Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 161 - 239
Target Start/End: Original strand, 31984797 - 31984873
Alignment:
Q  161 ttcctgagactttgttaattcacgtgcggtgctagcaagatgtgactgttgtatcctggagggtattagctatgagacc 239  Q
    |||||||||| ||||||||||||| ||| ||||||||| |  |||||||||||||||| |||| | |||||||||||||    
T  31984797 ttcctgagaccttgttaattcacgcgcgatgctagcaaaa--tgactgttgtatcctgtagggcactagctatgagacc 31984873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 160 - 241
Target Start/End: Original strand, 12273588 - 12273669
Alignment:
Q  160 gttcctgagactttgttaattcacgtgcggtgctagcaagatgtgactgttgtatcctggagggtattagctatgagaccta 241  Q
    |||| |||||| ||| |||||||| || ||||||||||||| |||| |||||||||||  || |||||| ||||||||||||    
T  12273588 gttcatgagaccttgctaattcacatgtggtgctagcaagaagtgattgttgtatcctaaagagtattaactatgagaccta 12273669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 260 - 326
Target Start/End: Original strand, 14802893 - 14802959
Alignment:
Q  260 atactcttaagtccagtgtttcgtgcacgcctcagtcaataatcgataagtttacttattctctatt 326  Q
    ||||||||||  ||||||||| ||||| ||||||| |||||||||||||||||   |||||||||||    
T  14802893 atactcttaaacccagtgttttgtgcatgcctcagccaataatcgataagtttttctattctctatt 14802959  T

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Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 160 - 215
Target Start/End: Original strand, 807670 - 807725
Alignment:
Q  160 gttcctgagactttgttaattcacgtgcggtgctagcaagatgtgactgttgtatc 215  Q
    |||| |||||| |||||||||||||||||||||||| || |  |||||||||||||    
T  807670 gttcatgagaccttgttaattcacgtgcggtgctagtaaaaaatgactgttgtatc 807725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 373 - 471
Target Start/End: Original strand, 7093692 - 7093790
Alignment:
Q  373 ttcttgtgtttgggtgatttggatcgaaagaaacgctcgggtctttaaccaaaagaaggtcactcttgatcaattactcgacaaaattaaacttcaatc 471  Q
    ||||||||| |||||||||||||| ||||||||| ||| ||||||| | |||||  ||| | |  |   ||||||||| || |||||||||||||||||    
T  7093692 ttcttgtgtgtgggtgatttggatagaaagaaacactcaggtctttcatcaaaaagaggcctcgttcattcaattactagataaaattaaacttcaatc 7093790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 176 - 214
Target Start/End: Complemental strand, 31405771 - 31405733
Alignment:
Q  176 taattcacgtgcggtgctagcaagatgtgactgttgtat 214  Q
    |||||||||||||||| |||||||| |||||||||||||    
T  31405771 taattcacgtgcggtgttagcaagaagtgactgttgtat 31405733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 92; Significance: 2e-44; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 373 - 476
Target Start/End: Original strand, 19294489 - 19294592
Alignment:
Q  373 ttcttgtgtttgggtgatttggatcgaaagaaacgctcgggtctttaaccaaaagaaggtcactcttgatcaattactcgacaaaattaaacttcaatct 472  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||    
T  19294489 ttcttgtgtttgggtgatttggattgaaagaaacgctcgggtctttaaccaaaagaaggacactcttgatcaattactcgacaaaattaaacgtcaatct 19294588  T
Q  473 ttct 476  Q
    ||||    
T  19294589 ttct 19294592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 373 - 476
Target Start/End: Complemental strand, 41768082 - 41767979
Alignment:
Q  373 ttcttgtgtttgggtgatttggatcgaaagaaacgctcgggtctttaaccaaaagaaggtcactcttgatcaattactcgacaaaattaaacttcaatct 472  Q
    |||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  41768082 ttcttgtgtttgggtgatttggatcgaaagaaacactcggatctttaaccaaaagaaggccactcttgatcaattactcgacaaaattaaacttcaatct 41767983  T
Q  473 ttct 476  Q
    ||||    
T  41767982 ttct 41767979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 121 - 250
Target Start/End: Original strand, 38787029 - 38787158
Alignment:
Q  121 ataacaaatatatattaagtt-cccaaa-catccaagagtagttcctgagactttgttaattcacgtgcggtgctagcaagatgtgactgttgtatcctg 218  Q
    ||||||||||||||||||||| |||| | |||| || ||| ||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  38787029 ataacaaatatatattaagtttcccagagcatctaaaagtggtttctgagactttgttaattcacatgcggtgctagcaagatgtgactgttgtatcctg 38787128  T
Q  219 gagggtattagctatgagacctactgcatcgg 250  Q
    ||| ||| || ||||  |||||||||||||||    
T  38787129 gagagtactaactat--gacctactgcatcgg 38787158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 373 - 473
Target Start/End: Complemental strand, 5900063 - 5899964
Alignment:
Q  373 ttcttgtgtttgggtgatttggatcgaaagaaacgctcgggtctttaaccaaaagaaggtcactcttgatcaattactcgacaaaattaaacttcaatct 472  Q
    ||||||||| ||||| |||| ||||||||||||||||||||||||||||||||| |||| |||| ||||||||||| ||| ||||||||| |||||||||    
T  5900063 ttcttgtgtgtgggtaatttagatcgaaagaaacgctcgggtctttaaccaaaa-aaggccacttttgatcaattattcgtcaaaattaagcttcaatct 5899965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 373 - 471
Target Start/End: Original strand, 19323994 - 19324092
Alignment:
Q  373 ttcttgtgtttgggtgatttggatcgaaagaaacgctcgggtctttaaccaaaagaaggtcactcttgatcaattactcgacaaaattaaacttcaatc 471  Q
    ||||||||| |||||||||||||| ||||||||||||||||||||| | |||||  ||| | |  |  |||||||||| || |||||||||||||||||    
T  19323994 ttcttgtgtgtgggtgatttggatagaaagaaacgctcgggtctttcatcaaaaagaggcctcgttcaatcaattactagataaaattaaacttcaatc 19324092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 373 - 471
Target Start/End: Complemental strand, 18299779 - 18299681
Alignment:
Q  373 ttcttgtgtttgggtgatttggatcgaaagaaacgctcgggtctttaaccaaaagaaggtcactcttgatcaattactcgacaaaattaaacttcaatc 471  Q
    ||||||||| |||||||||||||| ||||||| ||||||||||||| | |||||  ||| | |  |  |||||||||| || |||||||||||||||||    
T  18299779 ttcttgtgtgtgggtgatttggatagaaagaatcgctcgggtctttcatcaaaaagaggcctcgttccatcaattactagataaaattaaacttcaatc 18299681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 373 - 471
Target Start/End: Original strand, 32575239 - 32575337
Alignment:
Q  373 ttcttgtgtttgggtgatttggatcgaaagaaacgctcgggtctttaaccaaaagaaggtcactcttgatcaattactcgacaaaattaaacttcaatc 471  Q
    ||||||||| |||||||||||||| ||||||||| ||||||||||| | |||||  ||| | |  |  |||||||||| || |||||||||||||||||    
T  32575239 ttcttgtgtgtgggtgatttggatagaaagaaacactcgggtctttcatcaaaaagaggcctcgttcaatcaattactagataaaattaaacttcaatc 32575337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 176 - 239
Target Start/End: Complemental strand, 4648345 - 4648282
Alignment:
Q  176 taattcacgtgcggtgctagcaagatgtgactgttgtatcctggagggtattagctatgagacc 239  Q
    ||||||| |||| ||| |||||||| ||||||||||||||||| || ||| |||||||||||||    
T  4648345 taattcatgtgcagtgttagcaagaagtgactgttgtatcctgaagagtactagctatgagacc 4648282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 373 - 418
Target Start/End: Original strand, 38142009 - 38142054
Alignment:
Q  373 ttcttgtgtttgggtgatttggatcgaaagaaacgctcgggtcttt 418  Q
    ||||||||| |||||||||||||| ||||||||| |||||||||||    
T  38142009 ttcttgtgtgtgggtgatttggatagaaagaaacactcgggtcttt 38142054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 284 - 326
Target Start/End: Original strand, 30966665 - 30966707
Alignment:
Q  284 gcacgcctcagtcaataatcgataagtttacttattctctatt 326  Q
    ||||| ||||||||||||||||||||||| | |||||||||||    
T  30966665 gcacgtctcagtcaataatcgataagttttcctattctctatt 30966707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 373 - 418
Target Start/End: Original strand, 15669461 - 15669506
Alignment:
Q  373 ttcttgtgtttgggtgatttggatcgaaagaaacgctcgggtcttt 418  Q
    ||||||||| |||||||||| ||| ||||||||| |||||||||||    
T  15669461 ttcttgtgtgtgggtgatttcgatagaaagaaacactcgggtcttt 15669506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 373 - 418
Target Start/End: Original strand, 29626683 - 29626728
Alignment:
Q  373 ttcttgtgtttgggtgatttggatcgaaagaaacgctcgggtcttt 418  Q
    ||||||||| |||||||||||||| ||||||||| ||||| |||||    
T  29626683 ttcttgtgtgtgggtgatttggatagaaagaaacactcggatcttt 29626728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 86; Significance: 7e-41; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 373 - 486
Target Start/End: Complemental strand, 33574433 - 33574320
Alignment:
Q  373 ttcttgtgtttgggtgatttggatcgaaagaaacgctcgggtctttaaccaaaagaaggtcactcttgatcaattactcgacaaaattaaacttcaatct 472  Q
    ||||||| |||||||||| ||||||||||||||||||| || |||||||||||||||||  |||||||||||||||||||||||||||||||||||||||    
T  33574433 ttcttgtatttgggtgatctggatcgaaagaaacgctcaggcctttaaccaaaagaaggctactcttgatcaattactcgacaaaattaaacttcaatct 33574334  T
Q  473 ttctcgtggttgaa 486  Q
    |||| |||||||||    
T  33574333 ttctggtggttgaa 33574320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 160 - 250
Target Start/End: Original strand, 24542657 - 24542747
Alignment:
Q  160 gttcctgagactttgttaattcacgtgcggtgctagcaagatgtgactgttgtatcctggagggtattagctatgagacctactgcatcgg 250  Q
    |||| |||||| ||| |||||||||||||||||||||||||| ||| |||||||| |||||| ||| ||||||||||| | || |||||||    
T  24542657 gttcatgagaccttgctaattcacgtgcggtgctagcaagatatgattgttgtattctggagagtactagctatgagatcaaccgcatcgg 24542747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 164 - 250
Target Start/End: Original strand, 15051516 - 15051602
Alignment:
Q  164 ctgagactttgttaattcacgtgcggtgctagcaagatgtgactgttgtatcctggag-ggtattagctatgagacctactgcatcgg 250  Q
    ||||||| ||| |||| |||||||||||||||||||| | ||||||| ||| ||||||  ||||||||||||||| |||  |||||||    
T  15051516 ctgagaccttgctaatccacgtgcggtgctagcaagaagcgactgtt-tattctggagaagtattagctatgagatctatcgcatcgg 15051602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 81; Significance: 7e-38; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 111 - 337
Target Start/End: Original strand, 47833759 - 47833996
Alignment:
Q  111 ctaataacaaataacaaatatatattaagttccca--aacatccaagagtagttcctgagactttgttaattcacgtgcggtgctagcaagatgtgactg 208  Q
    |||||||||||||||||||   ||| |||||||||  | ||||||  ||| ||| ||||||| | |||||| |||||||||||||||||||| | |||||    
T  47833759 ctaataacaaataacaaat---tat-aagttcccatgagcatccataagtggtttctgagacctcgttaatccacgtgcggtgctagcaagaagcgactg 47833854  T
Q  209 ttgtatcctggagggtattagctatgagacctactgcatcgg-------------ggtggtgaaatactcttaagtccagtgtttcgtgcacgcctcagt 295  Q
    |||||| |||||| ||||||||||||||||||| ||||||||             ||||| |||||||||||||| ||| || ||| |||| ||||||||    
T  47833855 ttgtattctggagagtattagctatgagacctattgcatcggatgattcatccggggtggcgaaatactcttaagcccaatgcttcatgcatgcctcagt 47833954  T
Q  296 caataatcgataagtttacttattctctattctattgtattt 337  Q
    ||||||||||||||||||||| |||||||||||||| |||||    
T  47833955 caataatcgataagtttacttgttctctattctattatattt 47833996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 147 - 248
Target Start/End: Complemental strand, 2079213 - 2079112
Alignment:
Q  147 acatccaagagtagttcctgagactttgttaattcacgtgcggtgctagcaagatgtgactgttgtatcctggagggtattagctatgagacctactgca 246  Q
    |||||||| ||| |||| |||||| ||| ||||| |||||||||| ||| |||| ||||||||||||||||||||  |||||||||||||||| || |||    
T  2079213 acatccaaaagtggttcatgagaccttgctaatttacgtgcggtgttagtaagacgtgactgttgtatcctggagaatattagctatgagaccaaccgca 2079114  T
Q  247 tc 248  Q
    ||    
T  2079113 tc 2079112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 373 - 471
Target Start/End: Complemental strand, 16541209 - 16541111
Alignment:
Q  373 ttcttgtgtttgggtgatttggatcgaaagaaacgctcgggtctttaaccaaaagaaggtcactcttgatcaattactcgacaaaattaaacttcaatc 471  Q
    ||||||||| ||||||||||||||| ||||| ||| | | ||||||||| ||||||||| | |  |||||||||||||||| |||| ||| ||||||||    
T  16541209 ttcttgtgtgtgggtgatttggatcaaaagagacgttggagtctttaacaaaaagaaggcctcggttgatcaattactcgataaaactaagcttcaatc 16541111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 373 - 471
Target Start/End: Original strand, 15759727 - 15759825
Alignment:
Q  373 ttcttgtgtttgggtgatttggatcgaaagaaacgctcgggtctttaaccaaaagaaggtcactcttgatcaattactcgacaaaattaaacttcaatc 471  Q
    ||||||||| | |||||||||||| ||||||||| ||||||||||| | |||||  ||||| |  |  |||||||||| || |||||||||||||||||    
T  15759727 ttcttgtgtgtaggtgatttggatagaaagaaacactcgggtctttcatcaaaaagaggtctcgttcaatcaattactagataaaattaaacttcaatc 15759825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 160 - 242
Target Start/End: Original strand, 25588693 - 25588774
Alignment:
Q  160 gttcctgagactttgttaattcacgtgcggtgctagcaagatgtgactgttgtatcctggagggtattagctatgagacctac 242  Q
    |||| |||||| ||| ||||||||||||||||||||||||| ||||| | ||||| |||||| ||| ||||||||||| ||||    
T  25588693 gttcatgagaccttgctaattcacgtgcggtgctagcaagaagtgaccg-tgtattctggagagtactagctatgagatctac 25588774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 74; Significance: 1e-33; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 120 - 337
Target Start/End: Complemental strand, 36339113 - 36338882
Alignment:
Q  120 aataacaaatatatattaagttccca--aacatccaagagtagttcctgagactttgttaattcacgtgcggtgctagcaagatgtgactgttgtatcct 217  Q
    ||||||||||||||| |||||| |||  | ||| ||| ||| ||| ||||||| ||  |||||||| ||||||||||||||||  |||||||||||||||    
T  36339113 aataacaaatatatactaagtttccatgagcattcaaaagtggtttctgagaccttactaattcacatgcggtgctagcaagaactgactgttgtatcct 36339014  T
Q  218 ggagggtattagctatgagacctactgcatcgggg-------------tggtgaaatactcttaagtccagtgtttcgtgcacgcctcagtcaataatcg 304  Q
    |||| ||| |||| | |||| |||||||||||||              ||| |||||||||||||  |||||| |||||||||||||||||||||| |||    
T  36339013 ggagagtactagccacgagatctactgcatcgggtaacctattcgagatggcgaaatactcttaaa-ccagtgcttcgtgcacgcctcagtcaatattcg 36338915  T
Q  305 ataagtttacttattctctattctattgtattt 337  Q
    |||||||||| ||||||||||||||||||||||    
T  36338914 ataagtttacatattctctattctattgtattt 36338882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 120 - 337
Target Start/End: Original strand, 27648308 - 27648538
Alignment:
Q  120 aataacaaatatatattaagttccca--aacatccaagagtagttcctgagactttgttaattcacgtgcggtgctagcaagatgtgactgttgtatcct 217  Q
    ||||||||||||||| ||||||||||  | ||||||  ||| |||  |||||| |||||||| || ||||||||||||||||| | ||||||||||||||    
T  27648308 aataacaaatatataataagttcccatgagcatccataagtggtttttgagaccttgttaatccatgtgcggtgctagcaagaagcgactgttgtatcct 27648407  T
Q  218 ggagggtattagctatgagacctactgcatcgg-------------ggtggtgaaatactcttaagtccagtgtttcgtgcacgcctcagtcaataatcg 304  Q
    |||| |||||||||||||||||||  |||||||             ||||| |||||||| ||||||||| ||  |  | ||||||||| ||||||||||    
T  27648408 ggagagtattagctatgagacctatcgcatcggataatttatccaaggtggcgaaatacttttaagtccaatgcat--tccacgcctcaatcaataatcg 27648505  T
Q  305 ataagtttacttattctctattctattgtattt 337  Q
    |||||||||||| |||||||||||||| |||||    
T  27648506 ataagtttacttgttctctattctattatattt 27648538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 161 - 326
Target Start/End: Complemental strand, 44686295 - 44686118
Alignment:
Q  161 ttcctgagactttgttaattcacgtgcggtgctagcaagatgtgactgttgtatcctggagggtattagctatgagacctactgcatcgg---------- 250  Q
    |||||||||| ||| |||| |||||||||||||||||||| | |||||||||||||||||| |||||||||||||||||||  |||||||              
T  44686295 ttcctgagaccttgctaatccacgtgcggtgctagcaagaagcgactgttgtatcctggagagtattagctatgagacctatcgcatcggataacttatc 44686196  T
Q  251 ---ggtggtgaaatactcttaagtccagtgtttcgtgcacgcctcagtcaataatcgataagtttacttattctctatt 326  Q
       ||||| |||||||||||||| ||||||  |  |||| |||||||||||||||||| |||||| | |||||||||||    
T  44686195 cgaggtggcgaaatactcttaagcccagtgcattttgcatgcctcagtcaataatcgagaagttttc-tattctctatt 44686118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 251 - 312
Target Start/End: Complemental strand, 26690624 - 26690565
Alignment:
Q  251 ggtggtgaaatactcttaagtccagtgtttcgtgcacgcctcagtcaataatcgataagttt 312  Q
    |||||||||||||||||||||||| ||| |  | ||||||||| ||||||||||||||||||    
T  26690624 ggtggtgaaatactcttaagtccaatgtat--tacacgcctcattcaataatcgataagttt 26690565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 72; Significance: 2e-32; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 164 - 326
Target Start/End: Complemental strand, 24734423 - 24734249
Alignment:
Q  164 ctgagactttgttaattcacgtgcggtgctagcaagatgtgactgttgtatcctggagggtattagctatgagacctactgcatc-------------gg 250  Q
    ||||||| ||| |||||||| ||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||             ||    
T  24734423 ctgagaccttgctaattcacatgcggtgctagtaagatgtgactgttgtatcctggagagtattagctatgagacctactgcatcagataacctatctgg 24734324  T
Q  251 ggtggtgaaatactcttaagtccagtgtttcgtgcacgcctcagtcaataatcgataagtttacttattctctatt 326  Q
    ||||| ||| ||||||||||| | ||| ||||||||| |||||||||||||| ||||||||| | |||||||||||    
T  24734323 ggtggcgaagtactcttaagttcggtgcttcgtgcacacctcagtcaataattgataagttttc-tattctctatt 24734249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 383 - 486
Target Start/End: Complemental strand, 20692402 - 20692299
Alignment:
Q  383 tgggtgatttggatcgaaagaaacgctcgggtctttaaccaaaagaaggtcactcttgatcaattactcgacaaaattaaacttcaatctttctcgtggt 482  Q
    ||||||||||| ||||||| ||||||| |||| |||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| || ||||     
T  20692402 tgggtgatttgaatcgaaataaacgcttgggtatttaaccaaaagaatgtcactcttgatcaattactcgacaaaattaaccttcaatcttactggtggc 20692303  T
Q  483 tgaa 486  Q
    ||||    
T  20692302 tgaa 20692299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 164 - 331
Target Start/End: Complemental strand, 53837662 - 53837482
Alignment:
Q  164 ctgagactttgttaattcacgtgcggtgctagcaagatgtgactgttgtatcctggagggtattagctatgagacctactgcatcgg------------- 250  Q
    ||||||| ||| |||||||  |||||||||||||| | |||| |||||||||||| || |||||| |||||||| |||  |||||||                 
T  53837662 ctgagaccttgctaattcatatgcggtgctagcaaaaagtgattgttgtatcctgcagagtattaactatgagatctatcgcatcggatgattcatccga 53837563  T
Q  251 ggtggtgaaatactcttaagtccagtgtttcgtgcacgcctcagtcaataatcgataagtttacttattctctattctatt 331  Q
    ||||| |||||||||||||| ||| |  ||| |||||||||||||||||||||||||||||||||| ||||||||||||||    
T  53837562 ggtggcgaaatactcttaagcccaatacttcatgcacgcctcagtcaataatcgataagtttacttgttctctattctatt 53837482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 160 - 337
Target Start/End: Complemental strand, 53834068 - 53833878
Alignment:
Q  160 gttcctgagactttgttaattcacgtgcggtgctagcaagatgtgactgttgtatcctggagggtattagctatgagacctactgcat------------ 247  Q
    ||||||||||| ||| |||||||| ||||||||||| |||| |||| |||||||||||| || |||||||||||||||||||  ||||                
T  53834068 gttcctgagaccttgctaattcacatgcggtgctaggaagaagtgattgttgtatcctgcagagtattagctatgagacctatcgcatcgggttatttat 53833969  T
Q  248 -cggggtggtgaaatactcttaagtccagtgtttcgtgcacgcctcagtcaataatcgataagtttacttattctctattctattgtattt 337  Q
     |||| |||  |||||||||| || |||||| ||| |||||||||||  |||||||||||||||||| || ||||||||| |||| |||||    
T  53833968 ccgggatggcaaaatactcttcagcccagtgcttcatgcacgcctcaaccaataatcgataagtttagttgttctctattatattatattt 53833878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 160 - 250
Target Start/End: Complemental strand, 16196840 - 16196750
Alignment:
Q  160 gttcctgagactttgttaattcacgtgcggtgctagcaagatgtgactgttgtatcctggagggtattagctatgagacctactgcatcgg 250  Q
    |||| |||||| |||||||||||| |||||||||||||||| |||| ||||||||| ||||  ||| ||||||||| ||| || |||||||    
T  16196840 gttcatgagaccttgttaattcacatgcggtgctagcaagaagtgattgttgtatcatggaaagtactagctatgaaaccaaccgcatcgg 16196750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 178 - 241
Target Start/End: Original strand, 3083783 - 3083846
Alignment:
Q  178 attcacgtgcggtgctagcaagatgtgactgttgtatcctggagggtattagctatgagaccta 241  Q
    |||||| |||||||||||||||| ||||||| ||||| ||| || |||||||||||||||||||    
T  3083783 attcacatgcggtgctagcaagaagtgactgctgtattctgaagagtattagctatgagaccta 3083846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 373 - 471
Target Start/End: Complemental strand, 53459241 - 53459143
Alignment:
Q  373 ttcttgtgtttgggtgatttggatcgaaagaaacgctcgggtctttaaccaaaagaaggtcactcttgatcaattactcgacaaaattaaacttcaatc 471  Q
    ||||||||| |||||||||||||| ||||||||| ||||||||||| | |||||  ||| | |  |  |||||||||| || |||||||||||||||||    
T  53459241 ttcttgtgtgtgggtgatttggatagaaagaaacactcgggtctttcatcaaaaagaggcctcgttcaatcaattactagataaaattaaacttcaatc 53459143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 179 - 242
Target Start/End: Complemental strand, 7910381 - 7910318
Alignment:
Q  179 ttcacgtgcggtgctagcaagatgtgactgttgtatcctggagggtattagctatgagacctac 242  Q
    ||||| ||||||| |||||||| ||||||||||||||||| || ||| |||| |||||| ||||    
T  7910381 ttcacatgcggtgttagcaagaagtgactgttgtatcctgaagagtactagccatgagatctac 7910318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 66; Significance: 6e-29; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 165 - 337
Target Start/End: Original strand, 33827499 - 33827684
Alignment:
Q  165 tgagactttgttaattcacgtgcggtgctagcaagatgtgactgttgtatcctggagggtattagctatgagacctactgcatc-------------ggg 251  Q
    |||||| ||| |||| |||||||||||||||||||| | || ||||||||||||||| |||||| ||||||||||||  |||||             |||    
T  33827499 tgagaccttgctaatccacgtgcggtgctagcaagaagcgattgttgtatcctggagagtattatctatgagacctatcgcatcaggtgattcatccggg 33827598  T
Q  252 gtggtgaaatactcttaagtccagtgtttcgtgcacgcctcagtcaataatcgataagtttacttattctctattctattgtattt 337  Q
    ||||  ||||||||||||| |||||| ||||||||||||||||||||| | |||||| ||||||| |||||||||||||| |||||    
T  33827599 gtggcaaaatactcttaagcccagtgcttcgtgcacgcctcagtcaatgaccgataaatttacttgttctctattctattatattt 33827684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 148 - 239
Target Start/End: Complemental strand, 33545068 - 33544976
Alignment:
Q  148 catccaaga-gtagttcctgagactttgttaattcacgtgcggtgctagcaagatgtgactgttgtatcctggagggtattagctatgagacc 239  Q
    ||||||||| || |||||||| | |||  ||||||||||||| ||||||||||||||||||| |||||| ||||| ||| |||||||||||||    
T  33545068 catccaagaagttgttcctgatatttttctaattcacgtgcgatgctagcaagatgtgactgctgtatcatggagagtactagctatgagacc 33544976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 373 - 471
Target Start/End: Complemental strand, 40973605 - 40973507
Alignment:
Q  373 ttcttgtgtttgggtgatttggatcgaaagaaacgctcgggtctttaaccaaaagaaggtcactcttgatcaattactcgacaaaattaaacttcaatc 471  Q
    ||||||||| ||||| |||||||| ||||||||||||||||||||| | |||||  ||| | |  |  |||||||||| || |||||||||||||||||    
T  40973605 ttcttgtgtgtgggttatttggatagaaagaaacgctcgggtctttcatcaaaaagaggcctcgttccatcaattactagataaaattaaacttcaatc 40973507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 165 - 239
Target Start/End: Original strand, 17895633 - 17895707
Alignment:
Q  165 tgagactttgttaattcacgtgcggtgctagcaagatgtgactgttgtatcctggagggtattagctatgagacc 239  Q
    |||||| ||| || |||| |||||||| |||||||| |||| ||||||||||||||| ||| ||||| |||||||    
T  17895633 tgagaccttgctagttcatgtgcggtgttagcaagaagtgattgttgtatcctggagagtactagctgtgagacc 17895707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 373 - 471
Target Start/End: Complemental strand, 25982512 - 25982414
Alignment:
Q  373 ttcttgtgtttgggtgatttggatcgaaagaaacgctcgggtctttaaccaaaagaaggtcactcttgatcaattactcgacaaaattaaacttcaatc 471  Q
    ||||| ||| |||||||||||||| ||||||||||| || |||||| | |||||  ||||| |  |  |||||||||| || |||||||||||||||||    
T  25982512 ttcttctgtgtgggtgatttggatagaaagaaacgcccgtgtctttcatcaaaaagaggtctcgttccatcaattactagataaaattaaacttcaatc 25982414  T

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Target: scaffold0432 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0432
Description:

Target: scaffold0432; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 373 - 471
Target Start/End: Original strand, 8870 - 8968
Alignment:
Q  373 ttcttgtgtttgggtgatttggatcgaaagaaacgctcgggtctttaaccaaaagaaggtcactcttgatcaattactcgacaaaattaaacttcaatc 471  Q
    ||||||||| |||||||||||||| ||||||||||||||||||||| | | |||  ||| | |  || |||||||||| || |||||||||||||||||    
T  8870 ttcttgtgtgtgggtgatttggatagaaagaaacgctcgggtctttcatctaaaagaggcctcgtttcatcaattactagataaaattaaacttcaatc 8968  T

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