View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17711_high_3 (Length: 488)
Name: NF17711_high_3
Description: NF17711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17711_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 467; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 467; E-Value: 0
Query Start/End: Original strand, 6 - 472
Target Start/End: Original strand, 40696088 - 40696554
Alignment:
| Q |
6 |
tagcatcaataagataaatttttcacatgaagtatataataagtaactaaccacataaaagtagattctgtggaggaggtttctctttggcagggttagg |
105 |
Q |
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| T |
40696088 |
tagcatcaataagataaatttttcacatgaagtatataataagtaactaaccacataaaagtagattctgtggaggaggtttctctttggcagggttagg |
40696187 |
T |
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| Q |
106 |
attaggatcaaaaactctcacataaagctcttcacctaaataccaacttttcaaattctgtgatctcaagttccacattcctggattgtcaggatacaca |
205 |
Q |
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| T |
40696188 |
attaggatcaaaaactctcacataaagctcttcacctaaataccaacttttcaaattctgtgatctcaagttccacattcctggattgtcaggatacaca |
40696287 |
T |
|
| Q |
206 |
taaactgcactccatcctccagggaacacttgcacagttgagcgaacgacggggtcaaataggttataacttgaccttgactcttctttccattctcctt |
305 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40696288 |
taaactgcactccatcctccagggaacacttgcacagttgagcgaacgacggggtcaaataggttataacttgaccttgactcttctttccattctcctt |
40696387 |
T |
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| Q |
306 |
ctccatatccaacaacaaagaaactatatccatccaaatgccaagaatcaatgttggttaaagtgttcttaaccactatctctgcccactctttatgcaa |
405 |
Q |
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| T |
40696388 |
ctccatatccaacaacaaagaaactatatccatccaaatgccaagaatcaatgttggttaaagtgttcttaaccactatctctgcccactctttatgcaa |
40696487 |
T |
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| Q |
406 |
tgcacttgctacaaaaacatcgcgaaccgctttaacatttgaagtgttcttggaataagcatcaagt |
472 |
Q |
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| T |
40696488 |
tgcacttgctacaaaaacatcgcgaaccgctttaacatttgaagtgttcttggaataagcatcaagt |
40696554 |
T |
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