View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17711_high_5 (Length: 264)
Name: NF17711_high_5
Description: NF17711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17711_high_5 |
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Alignment Details
Target: chr7 (Bit Score: 143; Significance: 3e-75; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 106 - 248
Target Start/End: Complemental strand, 43926680 - 43926538
Alignment:
| Q |
106 |
tcacatattgagttagtacatgaatgaaaagtgcaaaaatataattgcggtagctttgtttgttgttgtgacgtgacgaatggacattgtgttgtgtgtt |
205 |
Q |
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| T |
43926680 |
tcacatattgagttagtacatgaatgaaaagtgcaaaaatataattgcggtagctttgtttgttgttgtgacgtgacgaatggacattgtgttgtgtgtt |
43926581 |
T |
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| Q |
206 |
acgttaggttttaccagcggaaatagaatgcgtaagtgggaag |
248 |
Q |
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| T |
43926580 |
acgttaggttttaccagcggaaatagaatgcgtaagtgggaag |
43926538 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 11 - 62
Target Start/End: Complemental strand, 43926775 - 43926724
Alignment:
| Q |
11 |
caaaggttcaatgccattttactaaaaagatggaaaactagctcgtttgaag |
62 |
Q |
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| T |
43926775 |
caaaggttcaatgccattttactaaaaagatggaaaactagctcgtttgaag |
43926724 |
T |
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