View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17711_low_1 (Length: 562)
Name: NF17711_low_1
Description: NF17711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17711_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 473; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 473; E-Value: 0
Query Start/End: Original strand, 1 - 550
Target Start/End: Original strand, 43926752 - 43927301
Alignment:
| Q |
1 |
tagtaaaatggcattgaacctttgtttatagttagataacctttcacttaaataaatttgtttatgcaagtatcctagtaaattacgactatttttataa |
100 |
Q |
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| T |
43926752 |
tagtaaaatggcattgaacctttgtttatagttagataaccttccacttaaataaatttgtttatgcaaatatactagtaaattacgactatttttataa |
43926851 |
T |
|
| Q |
101 |
gattacttataaattaagagcgtaaattgagcgttaaatcatgaggcaaattttagttgaactttcaagttacaccaaagcaaagcaaccaatggcaatt |
200 |
Q |
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| T |
43926852 |
gattacttataaattaagagc-----------gttaaatcatgaggcaaattttagttgaactttcaagttacaccaaagcaaagcaaccaatggcaatt |
43926940 |
T |
|
| Q |
201 |
atctctaacgtacctttaactctcgagatttaattttgtgaaaggttccaacgtcaataataggatacttgccgtacttgaccttcatataaaagggacc |
300 |
Q |
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| T |
43926941 |
atctctaacgtacctttaactctcgagatttaattttgtgaaaggttccaacgtcaataataggatacttgccgtacttgaccttcatataaaagggacc |
43927040 |
T |
|
| Q |
301 |
ctcactaggcctaccaaccccataattcgtgacatccccgtaaaccattttactaagcatcaccatcactgaatccaccatctccattgacaaatacttc |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43927041 |
ctcactaggcctaccaaccccataattcgtgacatccccgtaaaccattttactaagcatcaccatcactgaatccaccatctccattgacaaatacttc |
43927140 |
T |
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| Q |
401 |
atcagaaacaaccccaaattcaccatgccccttgacaaaatgtgaacctgcatgcaca-----------ttgttatatctgagcgtgacaggcaaactaa |
489 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
43927141 |
atcagaaacaaccccaaattcaccatgccccttgacaaaatgtgaacctgcatgcacattgcattcactttgttatatctgagcgtgacaggcaaactaa |
43927240 |
T |
|
| Q |
490 |
ttaatagcaatagtttaaccaaagttacataatcaatcacaatcatatactgattttcttc |
550 |
Q |
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| T |
43927241 |
ttaatagcaatagtttaaccaaagttacataatcaatcacaatcatatactgattttcttc |
43927301 |
T |
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