View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17711_low_4 (Length: 443)
Name: NF17711_low_4
Description: NF17711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17711_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 203; Significance: 1e-111; HSPs: 10)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 200 - 433
Target Start/End: Complemental strand, 24854775 - 24854541
Alignment:
| Q |
200 |
atgagcaactaagaggtgatagagtttttccgcacaatagcatttggagttgaccataaagtagttgattccaatagttatattcaaatggttcacgaca |
299 |
Q |
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||||||||| |||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24854775 |
atgagcaaccaagaggtgatggagtttttccgcacaatagcatttggggttgaccataaagtagttgattccaatagttatattcaaatggttcacgaca |
24854676 |
T |
|
| Q |
300 |
tgaacaaatactccgaggcattat-cattcaaagaatctggaaaatagtgttgaattcattcacataccatcgtcataaatggcttttaagatttatgaa |
398 |
Q |
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||||||| || ||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24854675 |
tgaacaattagtccgaggcatttttcattcaaagaatctggaaaatagtgttgaattcattcacataccatcgtcataaatggcttttaagatttatgaa |
24854576 |
T |
|
| Q |
399 |
ccgtaattacaactttgttgccacgctgctctctg |
433 |
Q |
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| T |
24854575 |
ccgtaattacaactttgttgccacgctgctctctg |
24854541 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 200 - 432
Target Start/End: Original strand, 24537613 - 24537846
Alignment:
| Q |
200 |
atgagcaactaagaggtgatagagtttttccgcacaatagcatttggagttgaccataaagtagttgattccaatagttatattcaaatggttcacgaca |
299 |
Q |
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||||||||| ||||| |||| |||||||||||| ||||||||||||||||||||||| ||||||||||||||| | ||||||||||||||||| | |||| |
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| T |
24537613 |
atgagcaaccaagagctgatggagtttttccgcgcaatagcatttggagttgaccatgaagtagttgattccagtggttatattcaaatggttgatgaca |
24537712 |
T |
|
| Q |
300 |
tgaacaaatactccgaggca-ttatcattcaaagaatctggaaaatagtgttgaattcattcacataccatcgtcataaatggcttttaagatttatgaa |
398 |
Q |
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| T |
24537713 |
tcaacaattactttgacacatttttccttaaacgaatctggaaaatagtgtcgagttcattcacataccgtcatcatgggtggctgtttagatttatgaa |
24537812 |
T |
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| Q |
399 |
ccgtaattacaactttgttgccacgctgctctct |
432 |
Q |
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| T |
24537813 |
ccgcaattacaacttcgttgcaacggttctctct |
24537846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 200 - 312
Target Start/End: Complemental strand, 24726885 - 24726773
Alignment:
| Q |
200 |
atgagcaactaagaggtgatagagtttttccgcacaatagcatttggagttgaccataaagtagttgattccaatagttatattcaaatggttcacgaca |
299 |
Q |
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||||||||| |||||||||| ||||||||||||| ||||||| |||||| ||||||||| ||||||||||| | ||||||||||||||||||| | |||| |
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| T |
24726885 |
atgagcaaccaagaggtgatggagtttttccgcaaaatagcacttggagctgaccataaggtagttgattctagtagttatattcaaatggttgatgaca |
24726786 |
T |
|
| Q |
300 |
tgaacaaatactc |
312 |
Q |
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| T |
24726785 |
taaacaattactc |
24726773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 200 - 312
Target Start/End: Complemental strand, 24826745 - 24826633
Alignment:
| Q |
200 |
atgagcaactaagaggtgatagagtttttccgcacaatagcatttggagttgaccataaagtagttgattccaatagttatattcaaatggttcacgaca |
299 |
Q |
| |
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||||||||| ||||| |||| ||||||||||||| ||||||| ||||| |||||||||| ||||||||||||| || |||||||||||||||| | |||| |
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| T |
24826745 |
atgagcaaccaagagctgatggagtttttccgcaaaatagcacttggaattgaccataaggtagttgattccagtacttatattcaaatggttgatgaca |
24826646 |
T |
|
| Q |
300 |
tgaacaaatactc |
312 |
Q |
| |
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| T |
24826645 |
tcaacaattactc |
24826633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 153 - 202
Target Start/End: Complemental strand, 24846867 - 24846818
Alignment:
| Q |
153 |
tataaatatcttacaaccagttcacattttgaattttataaacattaatg |
202 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
24846867 |
tataaatatcttacaaccagttcacattttgaattttataaacaataatg |
24846818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 70 - 119
Target Start/End: Complemental strand, 24846930 - 24846881
Alignment:
| Q |
70 |
tacaacaaattaatacatgtgtaacatgtattcaatttctatttcttgca |
119 |
Q |
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||||| |||||||||||||| |||||||||||||||||||| |||||||| |
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| T |
24846930 |
tacaataaattaatacatgtctaacatgtattcaatttctacttcttgca |
24846881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 333 - 419
Target Start/End: Complemental strand, 24797516 - 24797430
Alignment:
| Q |
333 |
aatctggaaaatagtgttgaattcattcacataccatcgtcataaatggcttttaagatttatgaaccgtaattacaactttgttgc |
419 |
Q |
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||||||||||||||||| || |||||||||||||| | |||| ||||| ||||||||| |||||| ||||||||||| ||||| |
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| T |
24797516 |
aatctggaaaatagtgtcgagttcattcacataccggcatcattggtggctgttaagatttttgaaccccaattacaacttcgttgc |
24797430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 153 - 202
Target Start/End: Complemental strand, 24837676 - 24837627
Alignment:
| Q |
153 |
tataaatatcttacaaccagttcacattttgaattttataaacattaatg |
202 |
Q |
| |
|
||||||||||||| |||||||||||||||||| |||||| |||| ||||| |
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| T |
24837676 |
tataaatatcttaaaaccagttcacattttgagttttatcaacaataatg |
24837627 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 221 - 293
Target Start/End: Complemental strand, 24697040 - 24696968
Alignment:
| Q |
221 |
gagtttttccgcacaatagcatttggagttgaccataaagtagttgattccaatagttatattcaaatggttc |
293 |
Q |
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|||| |||||||| | ||||||| |||||||||||||||||||||| || || || ||||| | ||||||||| |
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| T |
24697040 |
gagtatttccgcaaagtagcattgggagttgaccataaagtagttgcttacagtatttatactgaaatggttc |
24696968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 30 - 110
Target Start/End: Complemental strand, 24837783 - 24837698
Alignment:
| Q |
30 |
aagaaaagaaggagaacttcata-ccaccggttcacatgtata--caacaaattaatacatgtgtaacatg--tattcaatttcta |
110 |
Q |
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||||||||||||||||| || || ||||| ||| ||||||||| ||| |||||||||||||| ||||||| ||||||||||||| |
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| T |
24837783 |
aagaaaagaaggagaacatcttaaccaccagtttacatgtatatacaataaattaatacatgtctaacatgtatattcaatttcta |
24837698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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