View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17711_low_9 (Length: 262)

Name: NF17711_low_9
Description: NF17711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17711_low_9
NF17711_low_9
[»] chr2 (8 HSPs)
chr2 (14-247)||(11933729-11933962)
chr2 (14-247)||(11946950-11947183)
chr2 (14-231)||(11917558-11917775)
chr2 (16-185)||(8338565-8338734)
chr2 (14-188)||(11821201-11821375)
chr2 (38-188)||(11834989-11835139)
chr2 (19-95)||(11811394-11811470)
chr2 (110-143)||(35538966-35538999)
[»] chr4 (15 HSPs)
chr4 (15-185)||(36107939-36108109)
chr4 (15-177)||(21482671-21482833)
chr4 (15-185)||(36100680-36100850)
chr4 (14-187)||(38090682-38090855)
chr4 (15-185)||(34971536-34971706)
chr4 (16-176)||(36080076-36080236)
chr4 (37-185)||(36090226-36090374)
chr4 (14-173)||(38125516-38125675)
chr4 (14-173)||(38061847-38062006)
chr4 (43-173)||(37954139-37954269)
chr4 (25-173)||(38129480-38129628)
chr4 (60-173)||(38058494-38058607)
chr4 (61-173)||(38081908-38082020)
chr4 (73-176)||(38072835-38072938)
chr4 (14-176)||(38086286-38086448)
[»] chr6 (1 HSPs)
chr6 (15-185)||(6838700-6838870)
[»] chr3 (3 HSPs)
chr3 (106-148)||(2152495-2152537)
chr3 (106-148)||(2176154-2176196)
chr3 (110-148)||(2196698-2196736)


Alignment Details
Target: chr2 (Bit Score: 234; Significance: 1e-129; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 14 - 247
Target Start/End: Original strand, 11933729 - 11933962
Alignment:
Q  14 gtggtggtggatatggtaacatgatgagaaaatatggtctttcagttgataatattatcgatgcacaaataatcgatgttaatggtagattgcttgatag 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11933729 gtggtggtggatatggtaacatgatgagaaaatatggtctttcagttgataatattatcgatgcacaaataatcgatgttaatggtagattgcttgatag 11933828  T
Q  114 aaaatcaatgggagaagatcttttttgggctattaaaggtggtggtggagctagctttggtgttgttctttcttacaaaatcaagttagttaaagttcct 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11933829 aaaatcaatgggagaagatcttttttgggctattaaaggtggtggtggagctagctttggtgttgttctttcttacaaaatcaagttagttaaagttcct 11933928  T
Q  214 aaaatagtaactgtttttcaaattagaaaaactt 247  Q
    ||||||||||||||||||||||||||||||||||    
T  11933929 aaaatagtaactgtttttcaaattagaaaaactt 11933962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 14 - 247
Target Start/End: Original strand, 11946950 - 11947183
Alignment:
Q  14 gtggtggtggatatggtaacatgatgagaaaatatggtctttcagttgataatattatcgatgcacaaataatcgatgttaatggtagattgcttgatag 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11946950 gtggtggtggatatggtaacatgatgagaaaatatggtctttcagttgataatattatcgatgcacaaataatcgatgttaatggtagattgcttgatag 11947049  T
Q  114 aaaatcaatgggagaagatcttttttgggctattaaaggtggtggtggagctagctttggtgttgttctttcttacaaaatcaagttagttaaagttcct 213  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  11947050 aaaatcaatgggagaagatcttttttgggctattaaaggtggtggtggagctagctttggtgttgttctttcttacaaaatcaagttagttaaagttcat 11947149  T
Q  214 aaaatagtaactgtttttcaaattagaaaaactt 247  Q
    ||||||||||||||||||||||||||||||||||    
T  11947150 aaaatagtaactgtttttcaaattagaaaaactt 11947183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 14 - 231
Target Start/End: Original strand, 11917558 - 11917775
Alignment:
Q  14 gtggtggtggatatggtaacatgatgagaaaatatggtctttcagttgataatattatcgatgcacaaataatcgatgttaatggtagattgcttgatag 113  Q
    |||||| ||| ||||||||| |||||||||||||||||  ||||   |||||| || | || ||  ||||||||||   ||| |||||||||||||||||    
T  11917558 gtggtgctggttatggtaacttgatgagaaaatatggtacttcaaccgataatgttttggacgctgaaataatcgactctaaaggtagattgcttgatag 11917657  T
Q  114 aaaatcaatgggagaagatcttttttgggctattaaaggtggtggtggagctagctttggtgttgttctttcttacaaaatcaagttagttaaagttcct 213  Q
    ||||||||||||||||||||||||||||||||| | ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  11917658 aaaatcaatgggagaagatcttttttgggctataagaggtggtggtggagctaactttggtgttgttctttcttacaaaatcaagttagttaaagttcct 11917757  T
Q  214 aaaatagtaactgttttt 231  Q
    || |||||||||||||||    
T  11917758 aagatagtaactgttttt 11917775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 16 - 185
Target Start/End: Original strand, 8338565 - 8338734
Alignment:
Q  16 ggtggtggatatggtaacatgatgagaaaatatggtctttcagttgataatattatcgatgcacaaataatcgatgttaatggtagattgcttgatagaa 115  Q
    |||||||| ||||| ||  |||||||||| | ||||||||| ||||||||||| || || ||| |||| || ||||| |||||||     ||||||||||    
T  8338565 ggtggtgggtatggaaatttgatgagaaagtttggtctttctgttgataatatcattgacgcaaaaattattgatgtcaatggtaatactcttgatagaa 8338664  T
Q  116 aatcaatgggagaagatcttttttgggctattaaaggtggtggtggagctagctttggtgttgttctttc 185  Q
    ||||||||||||||||||| |||||||||||||  ||||||||||| ||||| ||||||||| |||||||    
T  8338665 aatcaatgggagaagatctgttttgggctattaggggtggtggtggtgctagttttggtgttattctttc 8338734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 14 - 188
Target Start/End: Original strand, 11821201 - 11821375
Alignment:
Q  14 gtggtggtggatatggtaacatgatgagaaaatatggtctttcagttgataatattatcgatgcacaaataatcgatgttaatggtagattgcttgatag 113  Q
    ||||||| || |||||||  ||| || ||||||||||| | || |||||||||||||| |||||  ||||  | |||||||| |||||  |  |  ||||    
T  11821201 gtggtggagggtatggtacaatgttgcgaaaatatggtttatctgttgataatattattgatgctgaaattgttgatgttaagggtaggcttttgaatag 11821300  T
Q  114 aaaatcaatgggagaagatcttttttgggctattaaaggtggtggtggagctagctttggtgttgttctttctta 188  Q
     ||||||||||| ||||||||||||||||||||   |||||||||||| ||||| || ||||||||||| |||||    
T  11821301 gaaatcaatgggtgaagatcttttttgggctatactaggtggtggtggtgctagtttcggtgttgttctgtctta 11821375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 38 - 188
Target Start/End: Complemental strand, 11835139 - 11834989
Alignment:
Q  38 tgagaaaatatggtctttcagttgataatattatcgatgcacaaataatcgatgttaatggtagattgcttgatagaaaatcaatgggagaagatctttt 137  Q
    |||||||||||||| | || |||||||||||||| |||||  ||||  | |||||||| || ||  |  |  |||| ||||||||||| |||||||||||    
T  11835139 tgagaaaatatggtttatctgttgataatattattgatgctgaaattgttgatgttaagggaaggcttttgaataggaaatcaatgggtgaagatctttt 11835040  T
Q  138 ttgggctattaaaggtggtggtggagctagctttggtgttgttctttctta 188  Q
    |||||||||   ||| |||||||| ||||| |||||||||||||| |||||    
T  11835039 ttgggctatacgaggcggtggtggtgctagttttggtgttgttctgtctta 11834989  T

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Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 95
Target Start/End: Complemental strand, 11811470 - 11811394
Alignment:
Q  19 ggtggatatggtaacatgatgagaaaatatggtctttcagttgataatattatcgatgcacaaataatcgatgttaa 95  Q
    ||||||| ||||| |||  | ||||||||||||||| ||  ||||||||| || ||||| |||||||||||||||||    
T  11811470 ggtggatttggtaccatatttagaaaatatggtcttgcaactgataatataattgatgctcaaataatcgatgttaa 11811394  T

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Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 110 - 143
Target Start/End: Original strand, 35538966 - 35538999
Alignment:
Q  110 atagaaaatcaatgggagaagatcttttttgggc 143  Q
    ||||||||||||||||||||||| ||||||||||    
T  35538966 atagaaaatcaatgggagaagatattttttgggc 35538999  T

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Target: chr4 (Bit Score: 91; Significance: 4e-44; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 15 - 185
Target Start/End: Original strand, 36107939 - 36108109
Alignment:
Q  15 tggtggtggatatggtaacatgatgagaaaatatggtctttcagttgataatattatcgatgcacaaataatcgatgttaatggtagattgcttgataga 114  Q
    ||||||||| ||||||||  |||||||||||| ||||||||| |||||||||||||| |||||| ||||  | |||||||| ||||   | |||||||||    
T  36107939 tggtggtgggtatggtaatttgatgagaaaatttggtctttctgttgataatattattgatgcaaaaatggttgatgttaagggtaatattcttgataga 36108038  T
Q  115 aaatcaatgggagaagatcttttttgggctattaaaggtggtggtggagctagctttggtgttgttctttc 185  Q
    |||||||||||||||||||||||||||||||| | |||||||||||| ||||| ||||||||| |||||||    
T  36108039 aaatcaatgggagaagatcttttttgggctataagaggtggtggtggtgctagttttggtgttattctttc 36108109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 15 - 177
Target Start/End: Original strand, 21482671 - 21482833
Alignment:
Q  15 tggtggtggatatggtaacatgatgagaaaatatggtctttcagttgataatattatcgatgcacaaataatcgatgttaatggtagattgcttgataga 114  Q
    ||||||||||||||| || ||||||||||||| ||||||||| |||||||||||||| || ||| ||||  | ||||| |||||||   | |||||||||    
T  21482671 tggtggtggatatggaaatatgatgagaaaatttggtctttctgttgataatattattgacgcaaaaattgttgatgtgaatggtaatatccttgataga 21482770  T
Q  115 aaatcaatgggagaagatcttttttgggctattaaaggtggtggtggagctagctttggtgtt 177  Q
    |||||||||||||||||||||||||||||||| | |||||||||||| ||||| | |||||||    
T  21482771 aaatcaatgggagaagatcttttttgggctataagaggtggtggtggtgctagttatggtgtt 21482833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 15 - 185
Target Start/End: Original strand, 36100680 - 36100850
Alignment:
Q  15 tggtggtggatatggtaacatgatgagaaaatatggtctttcagttgataatattatcgatgcacaaataatcgatgttaatggtagattgcttgataga 114  Q
    ||||||||| ||||||||  |||||||||||| |||||||||  |||||||||| || |||||| ||||  | ||||| |||||||   | |||||||||    
T  36100680 tggtggtgggtatggtaatttgatgagaaaatttggtctttctattgataatatcattgatgcaaaaattgttgatgtcaatggtaatatccttgataga 36100779  T
Q  115 aaatcaatgggagaagatcttttttgggctattaaaggtggtggtggagctagctttggtgttgttctttc 185  Q
    || ||||||||||||||||| ||||||||||| |  ||||||||||| ||||| ||||||||| |||||||    
T  36100780 aagtcaatgggagaagatctattttgggctataaggggtggtggtggtgctagttttggtgttattctttc 36100850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 14 - 187
Target Start/End: Original strand, 38090682 - 38090855
Alignment:
Q  14 gtggtggtggatatggtaacatgatgagaaaatatggtctttcagttgataatattatcgatgcacaaataatcgatgttaatggtagattgcttgatag 113  Q
    ||||||| || |||||||||||||||||||||| |||  | || |||||||||||| | |||||  | ||  | |||||| |||| ||| ||||||||||    
T  38090682 gtggtggggggtatggtaacatgatgagaaaatttgggttatctgttgataatattttggatgctaagattgttgatgttgatggaagagtgcttgatag 38090781  T
Q  114 aaaatcaatgggagaagatcttttttgggctattaaaggtggtggtggagctagctttggtgttgttctttctt 187  Q
      |||||||||| |||||| ||||||||||||||| |||||||||||||||||| ||||||||| || ||||||    
T  38090782 ggaatcaatgggggaagatgttttttgggctattagaggtggtggtggagctagttttggtgttattgtttctt 38090855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 15 - 185
Target Start/End: Complemental strand, 34971706 - 34971536
Alignment:
Q  15 tggtggtggatatggtaacatgatgagaaaatatggtctttcagttgataatattatcgatgcacaaataatcgatgttaatggtagattgcttgataga 114  Q
    ||||||||| ||||| ||  |||||||||||| |||||||||  |||||||||| || || ||| ||||  | ||||| |||||||   | |||||||||    
T  34971706 tggtggtggttatggaaatttgatgagaaaatttggtctttctattgataatatcattgacgcaaaaattgttgatgtcaatggtaatattcttgataga 34971607  T
Q  115 aaatcaatgggagaagatcttttttgggctattaaaggtggtggtggagctagctttggtgttgttctttc 185  Q
    || ||||||||||||||||| ||||||||||| | |||||||||||| ||||| ||||||||| |||||||    
T  34971606 aagtcaatgggagaagatctcttttgggctatcagaggtggtggtggtgctagttttggtgttattctttc 34971536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 16 - 176
Target Start/End: Original strand, 36080076 - 36080236
Alignment:
Q  16 ggtggtggatatggtaacatgatgagaaaatatggtctttcagttgataatattatcgatgcacaaataatcgatgttaatggtagattgcttgatagaa 115  Q
    |||||||| ||||||||  | |||||||||| |||||| || ||||||||||| || || ||| ||||  | ||||||||||||||  | ||||||||||    
T  36080076 ggtggtggttatggtaatttaatgagaaaatttggtctatctgttgataatataattgacgcaaaaattgttgatgttaatggtagtattcttgatagaa 36080175  T
Q  116 aatcaatgggagaagatcttttttgggctattaaaggtggtggtggagctagctttggtgt 176  Q
    ||||||||||||||||| | ||||||||||| |  ||||||||||| || || ||||||||    
T  36080176 aatcaatgggagaagatttattttgggctataaggggtggtggtggtgcaagttttggtgt 36080236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 37 - 185
Target Start/End: Complemental strand, 36090374 - 36090226
Alignment:
Q  37 atgagaaaatatggtctttcagttgataatattatcgatgcacaaataatcgatgttaatggtagattgcttgatagaaaatcaatgggagaagatcttt 136  Q
    |||||||||| |||||||||  |||||||||  || |||||| ||||  ||||||| |||||||   | |||||||||| |||||| | | |||||||||    
T  36090374 atgagaaaatttggtctttctattgataataccattgatgcaaaaattgtcgatgtcaatggtaatatccttgatagaagatcaatagaaaaagatcttt 36090275  T
Q  137 tttgggctattaaaggtggtggtggagctagctttggtgttgttctttc 185  Q
    |||||||||| | |||||||||||| ||||| ||||||||| |||||||    
T  36090274 tttgggctataagaggtggtggtggggctagttttggtgttattctttc 36090226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 14 - 173
Target Start/End: Original strand, 38125516 - 38125675
Alignment:
Q  14 gtggtggtggatatggtaacatgatgagaaaatatggtctttcagttgataatattatcgatgcacaaataatcgatgttaatggtagattgcttgatag 113  Q
    ||||||| || |||||||||||||||||||||| |||  | ||  |||||||| || | |||||  ||||  | ||||||||||||||  | ||||||||    
T  38125516 gtggtggagggtatggtaacatgatgagaaaatttgggttgtctattgataatgttgttgatgctgaaattgttgatgttaatggtaggattcttgatag 38125615  T
Q  114 aaaatcaatgggagaagatcttttttgggctattaaaggtggtggtggagctagctttgg 173  Q
     ||||||||||| ||||| |||||||||||||||| ||| ||||| ||||| || |||||    
T  38125616 gaaatcaatgggtgaagaacttttttgggctattagaggaggtggaggagcaagttttgg 38125675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 14 - 173
Target Start/End: Complemental strand, 38062006 - 38061847
Alignment:
Q  14 gtggtggtggatatggtaacatgatgagaaaatatggtctttcagttgataatattatcgatgcacaaataatcgatgttaatggtagattgcttgatag 113  Q
    |||||||||| ||||| ||| || || | ||||  |||||| ||| |||||||||||| ||||| || ||||| ||||| || ||||| || ||||| ||    
T  38062006 gtggtggtggctatggaaacttggtgcgtaaattcggtcttgcagctgataatattattgatgctcacataattgatgtgaagggtaggtttcttgacag 38061907  T
Q  114 aaaatcaatgggagaagatcttttttgggctattaaaggtggtggtggagctagctttgg 173  Q
    | || ||||||| || ||| ||||||||||||||| ||| ||||| ||||| || |||||    
T  38061906 agaagcaatgggtgaggattttttttgggctattagaggaggtggaggagcaagttttgg 38061847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 43 - 173
Target Start/End: Original strand, 37954139 - 37954269
Alignment:
Q  43 aaatatggtctttcagttgataatattatcgatgcacaaataatcgatgttaatggtagattgcttgatagaaaatcaatgggagaagatcttttttggg 142  Q
    |||||||||||||||| |||||||||  | || || || ||||| ||||| ||||||||  | ||||| ||| |||| ||||| || ||||| |||||||    
T  37954139 aaatatggtctttcagctgataatatacttgacgctcacataattgatgtgaatggtagggttcttgacagagaatcgatgggtgaggatctgttttggg 37954238  T
Q  143 ctattaaaggtggtggtggagctagctttgg 173  Q
    |||||| ||| ||||| ||||| ||||||||    
T  37954239 ctattagaggaggtggaggagcaagctttgg 37954269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 25 - 173
Target Start/End: Original strand, 38129480 - 38129628
Alignment:
Q  25 tatggtaacatgatgagaaaatatggtctttcagttgataatattatcgatgcacaaataatcgatgttaatggtagattgcttgatagaaaatcaatgg 124  Q
    ||||||||||||||||||||||  ||  | ||  ||||||||||| | |||||  |||| || ||||| ||||||||| | ||||| |  ||| | ||||    
T  38129480 tatggtaacatgatgagaaaattcgggttatctattgataatattgttgatgctaaaattattgatgtcaatggtagaattcttgacaagaaaactatgg 38129579  T
Q  125 gagaagatcttttttgggctattaaaggtggtggtggagctagctttgg 173  Q
    | |||||||||||||||||||||| ||| ||||| ||||| || |||||    
T  38129580 gggaagatcttttttgggctattagaggaggtggaggagcaagttttgg 38129628  T

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Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 60 - 173
Target Start/End: Original strand, 38058494 - 38058607
Alignment:
Q  60 tgataatattatcgatgcacaaataatcgatgttaatggtagattgcttgatagaaaatcaatgggagaagatcttttttgggctattaaaggtggtggt 159  Q
    ||||||||| || ||||| || ||||| ||||| || ||||| || ||||| ||| || ||||||| |||||| | ||||||||||||| |||||||||     
T  38058494 tgataatataattgatgctcacataattgatgtgaagggtaggtttcttgacagagaagcaatgggtgaagatttgttttgggctattagaggtggtgga 38058593  T
Q  160 ggagctagctttgg 173  Q
    ||||| || |||||    
T  38058594 ggagcaagttttgg 38058607  T

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Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 61 - 173
Target Start/End: Original strand, 38081908 - 38082020
Alignment:
Q  61 gataatattatcgatgcacaaataatcgatgttaatggtagattgcttgatagaaaatcaatgggagaagatcttttttgggctattaaaggtggtggtg 160  Q
    |||||| | |||||||| || ||||| ||||| || ||||| || ||||| ||| || ||||||| ||||||  |||||||||||||| ||||||||| |    
T  38081908 gataatgtaatcgatgctcacataattgatgtgaaaggtaggttacttgacagagaagcaatgggtgaagattatttttgggctattagaggtggtggag 38082007  T
Q  161 gagctagctttgg 173  Q
    |||| || |||||    
T  38082008 gagcaagttttgg 38082020  T

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Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 73 - 176
Target Start/End: Original strand, 38072835 - 38072938
Alignment:
Q  73 gatgcacaaataatcgatgttaatggtagattgcttgatagaaaatcaatgggagaagatcttttttgggctattaaaggtggtggtggagctagctttg 172  Q
    ||||| || ||||| ||||| || ||||| || ||||| ||| || ||||||| |||||| | ||||||||||||| ||||||||| ||||| || ||||    
T  38072835 gatgctcacataattgatgtgaagggtaggtttcttgacagagaagcaatgggtgaagatttgttttgggctattagaggtggtggaggagcaagttttg 38072934  T
Q  173 gtgt 176  Q
    ||||    
T  38072935 gtgt 38072938  T

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Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 14 - 176
Target Start/End: Original strand, 38086286 - 38086448
Alignment:
Q  14 gtggtggtggatatggtaacatgatgagaaaatatggtctttcagttgataatattatcgatgcacaaataatcgatgttaatggtagattgcttgatag 113  Q
    |||||||||||||||| | | || || | ||||| |||||| |||  ||||| || || |||||  | ||||| ||||| || ||||| || ||||| ||    
T  38086286 gtggtggtggatatggaaccttgttgcgtaaatacggtcttgcagccgataacatcattgatgcctacataattgatgtgaagggtaggtttcttgacag 38086385  T
Q  114 aaaatcaatgggagaagatcttttttgggctattaaaggtggtggtggagctagctttggtgt 176  Q
    | || ||||||| || ||| | ||||||||||||| ||||||||| ||||| || ||||||||    
T  38086386 agaagcaatgggtgaggatttcttttgggctattagaggtggtggaggagcaagttttggtgt 38086448  T

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Target: chr6 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 15 - 185
Target Start/End: Original strand, 6838700 - 6838870
Alignment:
Q  15 tggtggtggatatggtaacatgatgagaaaatatggtctttcagttgataatattatcgatgcacaaataatcgatgttaatggtagattgcttgataga 114  Q
    ||||||||| ||||| ||  |||||||||||| |||||||||  ||||||||||||| || ||| ||||  | |||||||| ||||   | |||||||||    
T  6838700 tggtggtgggtatggaaatttgatgagaaaatttggtctttctattgataatattattgacgcaaaaattgttgatgttaagggtaatattcttgataga 6838799  T
Q  115 aaatcaatgggagaagatcttttttgggctattaaaggtggtggtggagctagctttggtgttgttctttc 185  Q
    ||||||||||||||||||||||||||||| || | |||||||||||| ||||| ||||||||| |||||||    
T  6838800 aaatcaatgggagaagatcttttttgggccataagaggtggtggtggtgctagttttggtgttattctttc 6838870  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 106 - 148
Target Start/End: Original strand, 2152495 - 2152537
Alignment:
Q  106 cttgatagaaaatcaatgggagaagatcttttttgggctatta 148  Q
    ||||||||||||||||||||||||||| |||||||||||||||    
T  2152495 cttgatagaaaatcaatgggagaagatgttttttgggctatta 2152537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 106 - 148
Target Start/End: Original strand, 2176154 - 2176196
Alignment:
Q  106 cttgatagaaaatcaatgggagaagatcttttttgggctatta 148  Q
    ||||||||||||||||||||||||||| |||||||||||||||    
T  2176154 cttgatagaaaatcaatgggagaagatgttttttgggctatta 2176196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 110 - 148
Target Start/End: Original strand, 2196698 - 2196736
Alignment:
Q  110 atagaaaatcaatgggagaagatcttttttgggctatta 148  Q
    ||||||||||||||||||||||| |||||||||| ||||    
T  2196698 atagaaaatcaatgggagaagatgttttttgggccatta 2196736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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