View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17712_high_1 (Length: 598)
Name: NF17712_high_1
Description: NF17712
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17712_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 516; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 516; E-Value: 0
Query Start/End: Original strand, 19 - 585
Target Start/End: Original strand, 16691395 - 16691961
Alignment:
| Q |
19 |
ccatgttgcagcgaaaacactatgattcaaagcacaggcaaataactattatagttaatatagtcacagatattttaacagcatcaagttataaagaaaa |
118 |
Q |
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| T |
16691395 |
ccatgttgcagcgaaaacactatgattcaaagcacaggcaaataactattatagttaatattgtcacagatattttaacagcatgaagttataaagaaaa |
16691494 |
T |
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| Q |
119 |
tcttttaattacttgaaattctgaactgcttcacaagaagacatggaaggtactgagccttgattttggatggatgtatcagaaatttcttctgcaagaa |
218 |
Q |
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| T |
16691495 |
tcttttaattacttgaaattctgaactgcttcacaagaagacatggaaggtactgagccttgattttggatggatggatcagaaatttcttctgcaagaa |
16691594 |
T |
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| Q |
219 |
agaaaatgaaagaggaactattttataatgaaaagagtggctgaaaaatgtgcagtataaggtttattctattcttgaacatcctccaccagtaacaaaa |
318 |
Q |
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| T |
16691595 |
agaaaatgaaagaggaactattttataatgaaaagagtggttgaaaaatgtgtagtataaggtttattctattcttgaacatcctccaccagtaacaaaa |
16691694 |
T |
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| Q |
319 |
gaactttcatacagtaaaagtaaagagtatattgtggataatgaagaagaacaaagaaagataagaaattgtattttcatcttaaatgttaaaatattat |
418 |
Q |
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| T |
16691695 |
gaactttcatacagtaaaagtaaagagtatattgtggataatgaagaagaacaaagaaagataagaaattgtattttcatcttaaatgttaaaatattat |
16691794 |
T |
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| Q |
419 |
tatattctgcaatttggatcaaatcactagatgttccaccttatcttattactctacatgt-aaatcaaactatgccatcataacattaaatttttcttt |
517 |
Q |
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| T |
16691795 |
tatattctgcaatttggatcaaatcactagatgttccaccttatcttattactctacatgtaaaatcaaactatgccatcataacatt-aatttttcttt |
16691893 |
T |
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| Q |
518 |
tgccaattttccaaatattcttcttaaaagaataaaactagaatgaaaaattctctcagccacaggtt |
585 |
Q |
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| T |
16691894 |
tgccaattttccaaatattcttcctaaaagaataaaactagaataaataattctctcaaccacaggtt |
16691961 |
T |
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