View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17712_high_11 (Length: 393)
Name: NF17712_high_11
Description: NF17712
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17712_high_11 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 285; Significance: 1e-160; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 18 - 362
Target Start/End: Complemental strand, 21189331 - 21188987
Alignment:
| Q |
18 |
cttctcagtttctctttttcgtttcataaaatttaacaagttcaaagttctaatgaatagaatatagcaattatcagcatcaagacatataaataaaaca |
117 |
Q |
| |
|
|||||| ||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||| |||||| |||||||||||||||||||||||||| |
|
|
| T |
21189331 |
cttctccgtttctctttttcatttcataaaatttaacaagttcaaagttctaaagaatagaatataacaattagcagcatcaagacatataaataaaaca |
21189232 |
T |
|
| Q |
118 |
gctagaaacatgagcaaaggaagaagtaacaccttgtagcaaaggaataaaacacccttctatacatgtgagctaagtatattgttccaacccaatgttt |
217 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21189231 |
actagaaacatgagcaaatgaagaagtaacaccttgtagcaaaggaataaaacacccttctatacatgtgagctaagtatattgttccaacccaatgttt |
21189132 |
T |
|
| Q |
218 |
tagattatgctgtccatttcggtgcattgattttctagatctttatgagnnnnnnnnttaaatttttatatgtttgggatttcgaaaatcaatttgctag |
317 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21189131 |
tagattttgctgtccatttcggtgcattgattttctagatctttatgagaaaaaaaattaaatttttatatgtttgggatttcgaaaatcaatttgctag |
21189032 |
T |
|
| Q |
318 |
tataattgagtgcccaaatttttctcccttcttttgttcaataga |
362 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21189031 |
aataattgagtgcccaaatttttctcccttcttttgttcaataga |
21188987 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 19 - 153
Target Start/End: Complemental strand, 21205387 - 21205253
Alignment:
| Q |
19 |
ttctcagtttctctttttcgtttcataaaatttaacaagttcaaagttctaatgaatagaatatagcaattatcagcatcaagacatataaataaaacag |
118 |
Q |
| |
|
|||||||||||||||| || ||||| |||||||||||||||||||||||||| ||||||||||||| |||| ||||||||||||||||||||||||||| |
|
|
| T |
21205387 |
ttctcagtttctctttctcttttcacaaaatttaacaagttcaaagttctaaagaatagaatatagaaattgtcagcatcaagacatataaataaaacaa |
21205288 |
T |
|
| Q |
119 |
ctagaaacatgagcaaaggaagaagtaacaccttg |
153 |
Q |
| |
|
| |||||||||||||||||||||||||| |||||| |
|
|
| T |
21205287 |
ccagaaacatgagcaaaggaagaagtaaaaccttg |
21205253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 20 - 101
Target Start/End: Complemental strand, 21203585 - 21203504
Alignment:
| Q |
20 |
tctcagtttctctttttcgtttcataaaatttaacaagttcaaagttctaatgaatagaatatagcaattatcagcatcaag |
101 |
Q |
| |
|
||||||||| ||||| || ||||| |||||| ||||||||||||||| ||| ||||||||||||||||| |||||| |||| |
|
|
| T |
21203585 |
tctcagtttttctttctcttttcacaaaattgaacaagttcaaagttgtaaataatagaatatagcaattctcagcaccaag |
21203504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 109 - 153
Target Start/End: Complemental strand, 21155478 - 21155434
Alignment:
| Q |
109 |
aataaaacagctagaaacatgagcaaaggaagaagtaacaccttg |
153 |
Q |
| |
|
||||||||| | ||||||||||||||||||||||||||||||||| |
|
|
| T |
21155478 |
aataaaacaaccagaaacatgagcaaaggaagaagtaacaccttg |
21155434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 289 - 360
Target Start/End: Complemental strand, 21205250 - 21205179
Alignment:
| Q |
289 |
gtttgggatttcgaaaatcaatttgctagtataattgagtgcccaaatttttctcccttcttttgttcaata |
360 |
Q |
| |
|
|||||||||||||||||||||| ||||| |||||| ||||||| ||||||| ||| ||||||||| |||| |
|
|
| T |
21205250 |
gtttgggatttcgaaaatcaatatgctaaaataattcagtgcccgaatttttttcctgtcttttgttgaata |
21205179 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 45 - 96
Target Start/End: Complemental strand, 21217235 - 21217184
Alignment:
| Q |
45 |
aaaatttaacaagttcaaagttctaatgaatagaatatagcaattatcagca |
96 |
Q |
| |
|
|||||||||||||||||||||||||| |||||| ||||| |||| |||||| |
|
|
| T |
21217235 |
aaaatttaacaagttcaaagttctaaagaatagcatatacaaattttcagca |
21217184 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 164 - 210
Target Start/End: Complemental strand, 21155374 - 21155328
Alignment:
| Q |
164 |
ataaaacacccttctatacatgtgagctaagtatattgttccaaccc |
210 |
Q |
| |
|
|||||||| |||||||||||||||| | |||||||| |||||||||| |
|
|
| T |
21155374 |
ataaaacaaccttctatacatgtgaacgaagtatatggttccaaccc |
21155328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 45 - 110
Target Start/End: Complemental strand, 21221699 - 21221634
Alignment:
| Q |
45 |
aaaatttaacaagttcaaagttctaatgaatagaatatagcaattatcagcatcaagacatataaa |
110 |
Q |
| |
|
|||||| ||||||||||||||| ||| |||||| ||||| |||| |||| ||||||| ||||||| |
|
|
| T |
21221699 |
aaaattgaacaagttcaaagttgtaaagaatagcatatacaaattctcagtatcaagatatataaa |
21221634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 275 - 362
Target Start/End: Original strand, 21658907 - 21658993
Alignment:
| Q |
275 |
ttaaatttttatatgtttgggatttcgaaaatcaatttgctagtataattgagtgcccaaatttttctcccttcttttgttcaataga |
362 |
Q |
| |
|
||||||||| | |||||||||||||| ||||||| | ||||| ||||||||||||| || |||||| ||||||||||||| |||||| |
|
|
| T |
21658907 |
ttaaattttcagatgtttgggatttcaaaaatcagtctgctaaaataattgagtgcctaattttttc-cccttcttttgttaaataga |
21658993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 73 - 142
Target Start/End: Original strand, 21645884 - 21645951
Alignment:
| Q |
73 |
aatagaatatagcaattatcagcatcaagacatataaataaaacagctagaaacatgagcaaaggaagaa |
142 |
Q |
| |
|
|||||||||||||||||||||||| |||| | ||||||| |||| || ||||||||||||||||||||| |
|
|
| T |
21645884 |
aatagaatatagcaattatcagcaccaag--agataaatagaacaacttgaaacatgagcaaaggaagaa |
21645951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University