View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17712_high_14 (Length: 362)
Name: NF17712_high_14
Description: NF17712
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17712_high_14 |
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Alignment Details
Target: chr1 (Bit Score: 295; Significance: 1e-166; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 15 - 346
Target Start/End: Original strand, 8319488 - 8319819
Alignment:
| Q |
15 |
tgtgcttcttgttaaaacatcccttgctttccacttgtatgcttcacgcttaggccattgtcaatttcattctttaatttcattatggtccatgattaat |
114 |
Q |
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| T |
8319488 |
tgtgcttcttgttacaacatcccttgctttccacttgtatgcttcacgcttaggccattgtcaatttcattctttaatttcattatggtccatgattaat |
8319587 |
T |
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| Q |
115 |
taataaactgagtcatgctgttatacacattatcgaccattattaattcacattatcaaccattctacactgtaaaaatctactgctaatgcttcctccc |
214 |
Q |
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| T |
8319588 |
taataaactgagtcatgctgttatacacattatcgaccattattaattcacattatcaaccattctacactgtaaaaatctactgctaatgcttcctccc |
8319687 |
T |
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| Q |
215 |
ttcaatcaccttttattgtttagatgagaaatattttcacacctttgtttctttgtatttccaaaggtgcggaaaacagttctcatccnnnnnnntaaaa |
314 |
Q |
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| T |
8319688 |
ttcaatcaccttttattgtttagatgagaaatgttttcccacctttgtttgtttgtatttccaaaggtgcggaaaacagttctcatccaaaaaaataaaa |
8319787 |
T |
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| Q |
315 |
gatcaaaatccaaaggtgtttgtgtttctcac |
346 |
Q |
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| T |
8319788 |
gatcaaaatccaaaggtgtttgtgtttctcac |
8319819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 191 - 337
Target Start/End: Original strand, 8329485 - 8329632
Alignment:
| Q |
191 |
aatctactgctaatgcttcctcccttcaatcaccttttattgtttagatgagaaatattttcacacctttgtttctttgtatttccaaaggtgcggaaaa |
290 |
Q |
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| T |
8329485 |
aatctactgctaatgctccctccattcaatcaccttttattgtttagatgagaaatgttttcccacctttgtttgtttttatagccaaaggtgcggaaaa |
8329584 |
T |
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| Q |
291 |
cagttctcatcc-nnnnnnntaaaagatcaaaatccaaaggtgtttgt |
337 |
Q |
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| T |
8329585 |
cagttctcatccaaaaaaaataaaagatcaaaatccaaaggtgtttgt |
8329632 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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