View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17712_high_15 (Length: 355)
Name: NF17712_high_15
Description: NF17712
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17712_high_15 |
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Alignment Details
Target: chr5 (Bit Score: 251; Significance: 1e-139; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 17 - 275
Target Start/End: Original strand, 16114483 - 16114741
Alignment:
| Q |
17 |
tgcatgtgaatgtgtcgccttagtaggaaaacgcacactaaataagcgcagtgatgtgcaatgtgttctatggttttggtctacattttgaactctccca |
116 |
Q |
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| T |
16114483 |
tgcatgtgaatgtgtcgccttagtaggaaaacgcacactaaataagcgcagtgatgtgcaatgtgttctatggttttggtctacattttgaactctccca |
16114582 |
T |
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| Q |
117 |
tgtgaactcttgtacaattcatttgtaattcaaagacaagttcaatagatggggtcttgtttctaattcatacaacattgacatggtccaatacaatgat |
216 |
Q |
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| T |
16114583 |
tgtgaactcttgtacaattcatttgtaattcaaagacaagttcaatagatggggtcttgtttctaattcaaacaacattggcatggtccaatacaatgat |
16114682 |
T |
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| Q |
217 |
tcatttataaacacactaatcaaatccatacaatttatatcacaagtttctgttcatcc |
275 |
Q |
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| T |
16114683 |
tcatttataaacacactaatcaaatccatacaatttatatcacaagtttctgttcatcc |
16114741 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 258 - 342
Target Start/End: Original strand, 16114753 - 16114837
Alignment:
| Q |
258 |
acaagtttctgttcatccaacctttcttgttgcccatattcttatctttatcccttcaaataagccttttgtattggccatatct |
342 |
Q |
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| T |
16114753 |
acaagtttctgttcatccaacctttcgtgttgcccatattcttatctttatcccttgaaagaagccttttgtattggccatatct |
16114837 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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