View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17712_high_16 (Length: 355)

Name: NF17712_high_16
Description: NF17712
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17712_high_16
NF17712_high_16
[»] chr6 (14 HSPs)
chr6 (69-185)||(21189495-21189607)
chr6 (101-221)||(21212918-21213034)
chr6 (101-295)||(21305699-21305893)
chr6 (101-217)||(21274541-21274653)
chr6 (203-299)||(21205635-21205732)
chr6 (101-217)||(21174841-21174956)
chr6 (128-218)||(21244293-21244379)
chr6 (105-202)||(21295986-21296079)
chr6 (101-186)||(21155502-21155581)
chr6 (130-218)||(21187484-21187568)
chr6 (130-218)||(21188111-21188195)
chr6 (130-218)||(21186857-21186941)
chr6 (101-151)||(21205739-21205789)
chr6 (101-155)||(21233878-21233932)
[»] scaffold1787 (1 HSPs)
scaffold1787 (101-302)||(1138-1338)
[»] scaffold0060 (1 HSPs)
scaffold0060 (101-235)||(23131-23260)
[»] scaffold0016 (1 HSPs)
scaffold0016 (169-218)||(55808-55857)


Alignment Details
Target: chr6 (Bit Score: 88; Significance: 3e-42; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 69 - 185
Target Start/End: Complemental strand, 21189607 - 21189495
Alignment:
Q  69 atcagtatgataatgataatgattgatgaaaatgcaatatcggaagatacatgcaaacaagtttgattgtgtgattttaggactatatatagaagagtgc 168  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||    |||||||||||||     
T  21189607 atcagtatgataatgataatgattgatgaaaatgcaatatcggaagatacatgtaaataagtttgattgtgtgattttagga----atatagaagagtgt 21189512  T
Q  169 ttgatctaccaactttt 185  Q
    |||||||||||||||||    
T  21189511 ttgatctaccaactttt 21189495  T

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Target: chr6; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 101 - 221
Target Start/End: Complemental strand, 21213034 - 21212918
Alignment:
Q  101 tgcaatatcggaagatacatgcaaacaagtttgattgtgtgattttaggactatatatagaagagtgcttgatctaccaactttttgttcattgtgctat 200  Q
    |||||||||| ||||| |||| ||| ||||||||||||||||||||| |||||||    |||||||||||||||||||||||||||  ||||||||||||    
T  21213034 tgcaatatcgaaagatgcatgtaaataagtttgattgtgtgattttatgactata----gaagagtgcttgatctaccaactttttcctcattgtgctat 21212939  T
Q  201 atgttcttaacctttaccaat 221  Q
    |||||||||||||||||||||    
T  21212938 atgttcttaacctttaccaat 21212918  T

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Target: chr6; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 101 - 295
Target Start/End: Complemental strand, 21305893 - 21305699
Alignment:
Q  101 tgcaatatcggaagatacatgcaaacaagtttgattgtgtgattttaggactatatatagaagagtgcttgatc----taccaactttttgttcattgtg 196  Q
    ||||||||||||||||||||  ||| |||||  ||||||||||||||||||||||    |||||| ||||||||    ||||||||||||  |||||||     
T  21305893 tgcaatatcggaagatacatataaataagtt--attgtgtgattttaggactata----gaagagggcttgatcgatctaccaactttttcctcattgta 21305800  T
Q  197 ctatatgttcttaacctttaccaa-tcataaatgcaacaataaccatcttcccatttccgatgcatacctt-gacattaaggttcactcttttattgctg 294  Q
    || ||| |||| |||||||| ||| ||| |||||||||||  |||| ||||||||||| |||||| ||||| ||||||||||||||| |||||||| |||    
T  21305799 ctgtattttctaaacctttaacaaatcacaaatgcaacaagtaccaacttcccatttctgatgcacaccttagacattaaggttcacccttttatttctg 21305700  T

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Target: chr6; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 101 - 217
Target Start/End: Complemental strand, 21274653 - 21274541
Alignment:
Q  101 tgcaatatcggaagatacatgcaaacaagtttgattgtgtgattttaggactatatatagaagagtgcttgatctaccaactttttgttcattgtgctat 200  Q
    |||||||||| || ||||||| ||| |||||||||||| |||||||| ||||||||||    |||||||||||||||||||||||| ||||||||||||     
T  21274653 tgcaatatcgaaatatacatgtaaataagtttgattgtttgattttaagactatatat----gagtgcttgatctaccaactttttcttcattgtgctac 21274558  T
Q  201 atgttcttaacctttac 217  Q
    || ||||| ||||||||    
T  21274557 atattctttacctttac 21274541  T

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Target: chr6; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 203 - 299
Target Start/End: Complemental strand, 21205732 - 21205635
Alignment:
Q  203 gttcttaacctttaccaatcataaatgcaacaataaccatcttcccatttccgatgcatacc-ttgacattaaggttcactcttttattgctgaattt 299  Q
    |||||||||||||| |||||| ||||||||||||||||| |||||| ||||||||||||||| |||||||||||||||||  ||| ||||||| ||||    
T  21205732 gttcttaacctttatcaatcacaaatgcaacaataaccaacttcccttttccgatgcatacctttgacattaaggttcaccatttcattgctgcattt 21205635  T

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Target: chr6; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 101 - 217
Target Start/End: Complemental strand, 21174956 - 21174841
Alignment:
Q  101 tgcaatatcggaagatacatgcaaacaagtttgattgtgtgattttaggactatatatagaagagtgcttgatctaccaactttttgtt---cattgtgc 197  Q
    |||||||||| |||||||||| ||| |||||||||||||| ||||||||||    |||||||||||||||||||||||||||  || ||   |||| | |    
T  21174956 tgcaatatcgaaagatacatgtaaataagtttgattgtgtaattttaggac----tatagaagagtgcttgatctaccaactacttcttccccattcttc 21174861  T
Q  198 tatatgttcttaacctttac 217  Q
    ||||||||||||||||||||    
T  21174860 tatatgttcttaacctttac 21174841  T

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Target: chr6; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 128 - 218
Target Start/End: Original strand, 21244293 - 21244379
Alignment:
Q  128 agtttgattgtgtgattttaggactatatatagaagagtgcttgatctaccaactttttgttcattgtgctatatgttcttaacctttacc 218  Q
    |||||||||||||||||||||||||| |    |||||||| |||||||||||||||| |  ||||||||||| ||||||||||||||||||    
T  21244293 agtttgattgtgtgattttaggactaca----gaagagtgtttgatctaccaactttatcctcattgtgctacatgttcttaacctttacc 21244379  T

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Target: chr6; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 105 - 202
Target Start/End: Complemental strand, 21296079 - 21295986
Alignment:
Q  105 atatcggaagatacatgcaaacaagtttgattgtgtgattttaggactatatatagaagagtgcttgatctaccaactttttgttcattgtgctatat 202  Q
    |||||| ||||  |||| ||| ||||||| ||||||||||||||||||||| |    |||||||||||||||||||||||||| || |||||||||||    
T  21296079 atatcgaaagacgcatgtaaataagtttggttgtgtgattttaggactataaa----agagtgcttgatctaccaactttttgctcgttgtgctatat 21295986  T

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Target: chr6; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 101 - 186
Target Start/End: Complemental strand, 21155581 - 21155502
Alignment:
Q  101 tgcaatatcggaagatacatgcaaacaagtttgattgtgtgattttaggactatatatagaagagtgcttgatctaccaacttttt 186  Q
    |||||||||| |||||||||| ||| |||||||||||| ||| ||||||||      ||||||| |||||||||||||||||||||    
T  21155581 tgcaatatcgaaagatacatgtaaataagtttgattgtatgaatttaggac------tagaagaatgcttgatctaccaacttttt 21155502  T

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Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 130 - 218
Target Start/End: Complemental strand, 21187568 - 21187484
Alignment:
Q  130 tttgattgtgtgattttaggactatatatagaagagtgcttgatctaccaactttttgttcattgtgctatatgttcttaacctttacc 218  Q
    ||||||||||||||||||| || ||| |    ||||||||||||||||| || | ||  ||||||||||||||| ||||||||||||||    
T  21187568 tttgattgtgtgattttagaacaataaa----agagtgcttgatctacctacctcttcctcattgtgctatatgctcttaacctttacc 21187484  T

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Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 130 - 218
Target Start/End: Complemental strand, 21188195 - 21188111
Alignment:
Q  130 tttgattgtgtgattttaggactatatatagaagagtgcttgatctaccaactttttgttcattgtgctatatgttcttaacctttacc 218  Q
    ||||||||||||||||||| || ||| | |    ||||||||||||||| || ||||  ||||||||||||||||||||||| ||||||    
T  21188195 tttgattgtgtgattttagaacaataaaaa----agtgcttgatctacctacctttttctcattgtgctatatgttcttaacatttacc 21188111  T

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Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 130 - 218
Target Start/End: Complemental strand, 21186941 - 21186857
Alignment:
Q  130 tttgattgtgtgattttaggactatatatagaagagtgcttgatctaccaactttttgttcattgtgctatatgttcttaacctttacc 218  Q
    ||||||||||||||||||| || ||| |    || ||| |||||||||| || ||||  ||||||| ||||||||||||||||||||||    
T  21186941 tttgattgtgtgattttagaacaataaa----agtgtgtttgatctacctaccttttcctcattgtactatatgttcttaacctttacc 21186857  T

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Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 101 - 151
Target Start/End: Complemental strand, 21205789 - 21205739
Alignment:
Q  101 tgcaatatcggaagatacatgcaaacaagtttgattgtgtgattttaggac 151  Q
    |||||||||| ||||| || | ||| |||||||||||||||||||||||||    
T  21205789 tgcaatatcgaaagatgcaagtaaataagtttgattgtgtgattttaggac 21205739  T

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Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 101 - 155
Target Start/End: Complemental strand, 21233932 - 21233878
Alignment:
Q  101 tgcaatatcggaagatacatgcaaacaagtttgattgtgtgattttaggactata 155  Q
    |||||||||| ||| |||||  ||| |||||||||||||| ||||||||||||||    
T  21233932 tgcaatatcgaaaggtacatataaataagtttgattgtgtcattttaggactata 21233878  T

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Target: scaffold1787 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: scaffold1787
Description:

Target: scaffold1787; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 101 - 302
Target Start/End: Original strand, 1138 - 1338
Alignment:
Q  101 tgcaatatcggaagatacatgcaaacaagtttgattgtgtgattttaggactatatatagaagagtgcttgatctaccaactttttgttcattgtgc--t 198  Q
    |||||||| |||||||||||| ||| ||||||||||||||| |||||||||    |||||||||||  |||||||||||||||||| |||| | |||  |    
T  1138 tgcaatatgggaagatacatgtaaataagtttgattgtgtggttttaggac----tatagaagagtatttgatctaccaactttttcttcagtttgctat 1233  T
Q  199 atatgttcttaacctttaccaatcataaatgcaacaataaccatcttcccatttccgatgcatacctt-gacattaaggttcactcttttattgctgaat 297  Q
    |||||||||||||  ||  |||||| ||||||||||||||||| ||||||||||| |||||| | ||| ||||||||||||||| |||||||||| | ||    
T  1234 atatgttcttaacaattgtcaatcacaaatgcaacaataaccaacttcccatttctgatgcacagcttggacattaaggttcacccttttattgccgcat 1333  T
Q  298 ttgtg 302  Q
    |||||    
T  1334 ttgtg 1338  T

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Target: scaffold0060 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 101 - 235
Target Start/End: Original strand, 23131 - 23260
Alignment:
Q  101 tgcaatatcggaagatacatgcaaacaagtttgattgtgtgattttaggactatatatagaagagtgcttgatctaccaactttttgttcattgtgctat 200  Q
    |||||||||  |||||||||| ||| ||||||||||||||||||||| |||    ||||||||| |||||||||||||||||||||  ||| ||||||||    
T  23131 tgcaatatcaaaagatacatgtaaataagtttgattgtgtgattttaagac----tatagaagaatgcttgatctaccaactttttcgtca-tgtgctat 23225  T
Q  201 atgttcttaacctttaccaatcataaatgcaacaa 235  Q
    |||||| |||||||||||||||| |||||||||||    
T  23226 atgttcctaacctttaccaatcacaaatgcaacaa 23260  T

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Target: scaffold0016 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 169 - 218
Target Start/End: Original strand, 55808 - 55857
Alignment:
Q  169 ttgatctaccaactttttgttcattgtgctatatgttcttaacctttacc 218  Q
    ||||||||||||| ||||  ||||| |||||||||||||||| |||||||    
T  55808 ttgatctaccaaccttttcctcattatgctatatgttcttaaactttacc 55857  T

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