View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17712_high_2 (Length: 590)
Name: NF17712_high_2
Description: NF17712
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17712_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 538; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 538; E-Value: 0
Query Start/End: Original strand, 15 - 572
Target Start/End: Original strand, 51804763 - 51805320
Alignment:
| Q |
15 |
cacagagaggctttcagggatgtttccggttaagagattactggaaagatctagaaggttgagtgattccaaggaagagaatgaatcaggaatagaagag |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51804763 |
cacagagaggctttcagggatgtttccggttaagagattactggaaagatctagaaggttgagtgattccaaggaagagaatgaatcaggaatagaagag |
51804862 |
T |
|
| Q |
115 |
ttcagcttgtttgcttgtagcataagcaagttaagctttctaaggttaccaatctcagaaggaattggaccagaaagaaagttataactgaaatcaattt |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51804863 |
ttcagcttgtttgcttgtagcataagcaagttaagctttctaaggttaccaatctcagaaggaattggaccagaaagaaagttataactgaaatcaattt |
51804962 |
T |
|
| Q |
215 |
tgacaaggttataagctctagagattgttggtgttaattgtcctgaaatcttgttcctctgaaggaaaagctcagacaagtttctagaatttccgttgat |
314 |
Q |
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| T |
51804963 |
tgacaaggttataagcactagagattgttggtgttatttgtcctgaaatcttgttcctctgaaggaaaagctcagacaagtttctagaatttccgttgat |
51805062 |
T |
|
| Q |
315 |
ctcgggaatcggaccagtcagattgttactgctcaaatcaatgattgaaacatgtggtaaactcaagagtccttttggaacagaaccttccaaacggtta |
414 |
Q |
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| T |
51805063 |
ctcgggaatcggaccggtcagattgttgctgctcaaatcaatgattgaaacatgtgataaactcaagagtccttttggaacagaaccttccaaacggtta |
51805162 |
T |
|
| Q |
415 |
ttactgacacgaaaccttaacagaaacatgcaatttgaataactttctggtataacaccagagaaaaagttatccaaaacaagaaaatataacagtttac |
514 |
Q |
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| T |
51805163 |
ttactgacacgaaaccttaacagaaacatgcaatttgaataactttctggtataacaccagagaaaaagttatccaaaacaagaaaatataacagtttac |
51805262 |
T |
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| Q |
515 |
ctccttgacagacatgttctggcaaagggccagacaacttgttttcggacaaatcaag |
572 |
Q |
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| T |
51805263 |
ctccttgacagacatgttctggcaaagggccagacaacttgttttcggacaaatcaag |
51805320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 269 - 307
Target Start/End: Complemental strand, 7423234 - 7423196
Alignment:
| Q |
269 |
tcctctgaaggaaaagctcagacaagtttctagaatttc |
307 |
Q |
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| T |
7423234 |
tcctctgatggaaaagttcagacaagtttctagaatttc |
7423196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 486 - 514
Target Start/End: Complemental strand, 7423012 - 7422984
Alignment:
| Q |
486 |
atccaaaacaagaaaatataacagtttac |
514 |
Q |
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| T |
7423012 |
atccaaaacaagaaaatataacagtttac |
7422984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 55; Significance: 3e-22; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 117 - 263
Target Start/End: Complemental strand, 20017879 - 20017733
Alignment:
| Q |
117 |
cagcttgtttgcttgtagcataagcaagttaagctttctaaggttaccaatctcagaaggaattggaccagaaagaaagttataactgaaatcaattttg |
216 |
Q |
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| T |
20017879 |
cagcttgttcccttgtaacacaagcaaattaagttttctaaggttaccaatttatgaagggattggaccatagagaaatttataactgaaatcaatttcg |
20017780 |
T |
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| Q |
217 |
acaaggttataagctctagagattgttggtgttaattgtcctgaaat |
263 |
Q |
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|||||| || ||||| ||||||||| || |||| |||| |||||| |
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| T |
20017779 |
acaaggctaatagctcaagagattgtcggagttatatgtcttgaaat |
20017733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 366 - 429
Target Start/End: Complemental strand, 20017652 - 20017589
Alignment:
| Q |
366 |
atgtggtaaactcaagagtccttttggaacagaaccttccaaacggttattactgacacgaaac |
429 |
Q |
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| T |
20017652 |
atgtggtaaacttaagagtcactttggaaccaaaccttctaaacggttgttactgatacgaaac |
20017589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 15 - 78
Target Start/End: Complemental strand, 20017963 - 20017900
Alignment:
| Q |
15 |
cacagagaggctttcagggatgtttccggttaagagattactggaaagatctagaaggttgagt |
78 |
Q |
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|||||||||||||| |||||||| | ||||||||||| |||||||||| |||||||||||| |
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| T |
20017963 |
cacagagaggcttttggggatgttctcagttaagagattgttggaaagatcaagaaggttgagt |
20017900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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