View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17712_high_23 (Length: 241)
Name: NF17712_high_23
Description: NF17712
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17712_high_23 |
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| [»] chr3 (3 HSPs) |
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| [»] scaffold0386 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 211; Significance: 1e-116; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 19 - 241
Target Start/End: Original strand, 18536616 - 18536838
Alignment:
| Q |
19 |
ggcataccatccaagtcatagttagaccatatttcatgtaatgttgtctttatttaatctggttatttgtgctttagacatgagtatctaaatatttcgt |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18536616 |
ggcataccatccaagtcatagttagaccatatttcatgtaatgttgtctttatttaatctggttatttgtgctttagacatgagtatctaaatatttcgt |
18536715 |
T |
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| Q |
119 |
gattaggttgattttgttctagctgtttgaacaatgtaaactgtgaaactatatttaatacaattgcaattctagtatttatacaatataatttatgttt |
218 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
18536716 |
gattaggttgattctgttctagctgtttgaacaatgtaaactgtgaaactatatttaatacaattacaattctagtatttatacaatataatttatgttt |
18536815 |
T |
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| Q |
219 |
aatggtttttatatcttgatcac |
241 |
Q |
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|||||||||| |||||||||||| |
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| T |
18536816 |
aatggtttttgtatcttgatcac |
18536838 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 148 - 241
Target Start/End: Original strand, 18547227 - 18547320
Alignment:
| Q |
148 |
aacaatgtaaactgtgaaactatatttaatacaattgcaattctagtatttatacaatataatttatgtttaatggtttttatatcttgatcac |
241 |
Q |
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||||||||||||| ||||||| |||| || |||||||||||||||||||||||||||||||| || ||||||||| ||||| |||||||||||| |
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| T |
18547227 |
aacaatgtaaactatgaaactctattcaacacaattgcaattctagtatttatacaatataacttgtgtttaatgctttttgtatcttgatcac |
18547320 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 133 - 228
Target Start/End: Original strand, 18543015 - 18543110
Alignment:
| Q |
133 |
tgttctagctgtttgaacaatgtaaactgtgaaactatatttaatacaattgcaattctagtatttatacaatataatttatgtttaatggttttt |
228 |
Q |
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| T |
18543015 |
tgttctagctgtttgaacaatgtaaacaatgaaactctattcaacataattgcaattctaatctttatacaataaaacttgtgtttaatgtttttt |
18543110 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0386 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: scaffold0386
Description:
Target: scaffold0386; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 22 - 238
Target Start/End: Complemental strand, 4139 - 3923
Alignment:
| Q |
22 |
ataccatccaagtcatagttagaccatatttcatgtaatgttgtctttatttaatctggttatttgtgctttagacatgagtatctaaatatttcgtgat |
121 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4139 |
ataccatccaagtcatagttagaccatatttcatgtaatgttgtctttatttaatttggttatttgtgctttagacatgagtatctaaatatttcgtgat |
4040 |
T |
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| Q |
122 |
taggttgattttgttctagctgtttgaacaatgtaaactgtgaaactatatttaatacaattgcaattctagtatttatacaatataatttatgtttaat |
221 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||| |
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| T |
4039 |
taagttgattttgttctagctgtttgaacaatgtaaactgtgaaactatatttaatacaattgcaattctagtatttatacgatataacttatgtttaat |
3940 |
T |
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| Q |
222 |
ggtttttatatcttgat |
238 |
Q |
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||||||| ||||||||| |
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| T |
3939 |
ggtttttgtatcttgat |
3923 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 140; Significance: 2e-73; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 20 - 228
Target Start/End: Original strand, 5693274 - 5693488
Alignment:
| Q |
20 |
gcataccatccaagtcatagttagaccatatttcatgtaatgttgtctttatttaatctggttatttgtgctttagacatgagtatctaaatatttcgtg |
119 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||| |||||| ||||||| |
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| T |
5693274 |
gcatgccatccaagtcatagttagaccatatttcatgtaatgttgtctttatttaatctgattatttgtgctttagccatgagtagctaaatttttcgtg |
5693373 |
T |
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| Q |
120 |
attaggt------tgattttgttctagctgtttgaacaatgtaaactgtgaaactatatttaatacaattgcaattctagtatttatacaatataattta |
213 |
Q |
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||||||| |||||||||| || ||||||||||||| ||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| || |
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| T |
5693374 |
attaggtctaatatgattttgttataactgtttgaacaatctaaactgtgaaactatattaaatacaattgcaattttagtatttatacaatataacata |
5693473 |
T |
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| Q |
214 |
tgtttaatggttttt |
228 |
Q |
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||||||||| ||||| |
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| T |
5693474 |
tgtttaatgtttttt |
5693488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 50 - 228
Target Start/End: Original strand, 5692536 - 5692720
Alignment:
| Q |
50 |
tttcatgtaatgttgtctttatttaatctggttatttgtgctttagacatgagtatctaaatatttcgtgattaggt------tgattttgttctagctg |
143 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||| |||||||| |||||| |||||||||||||| |||||||||| || ||| |
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| T |
5692536 |
tttcatgtaatgttgtctttatttaatctgattatttgtgctttagccatgagtagctaaatttttcgtgattaggtctaatatgattttgttataactg |
5692635 |
T |
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| Q |
144 |
tttgaacaatgtaaactgtgaaactatatttaatacaattgcaattctagtatttatacaatataatttatgtttaatggttttt |
228 |
Q |
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| T |
5692636 |
tttgaacaatctaaactgtgaaactatattaaatacaattgcaattttagtatttatacaatataacatatgtttaatgtttttt |
5692720 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 19 - 241
Target Start/End: Original strand, 5686389 - 5686610
Alignment:
| Q |
19 |
ggcataccatccaagtcatagttagaccatatttcatgtaatgttgtctttatttaatctggttatttgtgctttagacatgagtatctaaatatttcgt |
118 |
Q |
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||||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| ||||| | |||| |
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| T |
5686389 |
ggcatgccatccaagtcatatttagaccatatttcatgaaatgttgtctttatttaatctggttatttgtgctttagcaatgagtagttaaatttctcgt |
5686488 |
T |
|
| Q |
119 |
gattaggt--------tgattttgttctagctgtttgaacaatgtaaactgtgaaactatatttaatacaattgcaattctagtatttatacaatataat |
210 |
Q |
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|||||||| | ||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5686489 |
gattaggtctataagataattatgttctagctgtttgaacaa---------tgaaactatatttaatacaattgcaattctagtatttatacaatataac |
5686579 |
T |
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| Q |
211 |
ttatgtttaatggtttttatatcttgatcac |
241 |
Q |
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||||||||| || ||||| |||||| ||||| |
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| T |
5686580 |
ttatgtttattgttttttgtatcttcatcac |
5686610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 158 - 228
Target Start/End: Original strand, 22721962 - 22722032
Alignment:
| Q |
158 |
actgtgaaactatatttaatacaattgcaattctagtatttatacaatataatttatgtttaatggttttt |
228 |
Q |
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||||| ||||||||||||||||||||||||||||||| ||||| || |||||||| ||||| ||| ||||| |
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| T |
22721962 |
actgtaaaactatatttaatacaattgcaattctagtctttattcagtataatttgtgtttgatgtttttt |
22722032 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 51 - 109
Target Start/End: Complemental strand, 12104964 - 12104906
Alignment:
| Q |
51 |
ttcatgtaatgttgtctttatttaatctggttatttgtgctttagacatgagtatctaa |
109 |
Q |
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||||||||||||||| || |||||||| ||||||||||| |||| |||||||| |||| |
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| T |
12104964 |
ttcatgtaatgttgttttcttttaatctagttatttgtgcattagtcatgagtagctaa |
12104906 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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