View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17712_high_3 (Length: 559)
Name: NF17712_high_3
Description: NF17712
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17712_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 349; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 99 - 544
Target Start/End: Original strand, 2782917 - 2783357
Alignment:
| Q |
99 |
aatgtttggttacgaatttcaaccaagtatgccaacgtctccaactacagagcagttgtaattctgtctgatagtgaatgaattagagtttgcagtgcta |
198 |
Q |
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| T |
2782917 |
aatgtttggttacgaatttcaaccaagtatgccaacgtcgccaactacagagcagttgtaattctgtctgatagtgaatgaattagagtttgcagtgcta |
2783016 |
T |
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| Q |
199 |
caactcatatataaatactacggtccaaattacaagaatcaagggtggagctaggcttttgagcctagaatttaaaaagaaatgcaaatatacccttata |
298 |
Q |
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| T |
2783017 |
caactcatatataaatactacggtccaaattacaagaatcaagggtggagctaggcttttgagcctaga----aaaaagaaatgcaaatatacccttata |
2783112 |
T |
|
| Q |
299 |
ttttgcattttaaaccccta----nnnnnnnnncaccactagacaaaagctctaaaactaaaaaatttgaacacctaggttaaatttctggctatgccac |
394 |
Q |
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| T |
2783113 |
ttttgcattttaaacccctatttttttttttttcagcactaaacaaaagctctaaaactcaaaaatttgaacacctaggttaaatttctggctatgccac |
2783212 |
T |
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| Q |
395 |
taacacggatattcatattatccaacaaaacatcgtgtcactaaattgtataactaacatttaaatctaataacacacgagtaaagatgaaaaacgacaa |
494 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2783213 |
taacacggatattcatattatccaacaaaacatcgtgtcactaaattgtataactaacatttaaatctaataacacacgagtaaagatgaaaaacgacaa |
2783312 |
T |
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| Q |
495 |
agactgaatctcagtaaatcacacaaaatgaataaaagaggggtgagtta |
544 |
Q |
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| T |
2783313 |
ag-----atctcagtaaaccacacaaaatgaataaaagaggggtgagtta |
2783357 |
T |
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Target: chr1 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 167 - 215
Target Start/End: Complemental strand, 3267745 - 3267697
Alignment:
| Q |
167 |
tgatagtgaatgaattagagtttgcagtgctacaactcatatataaata |
215 |
Q |
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||||| |||||||||||| |||| |||| ||||||||||||||||||| |
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| T |
3267745 |
tgataatgaatgaattagggtttacagttttacaactcatatataaata |
3267697 |
T |
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