View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17712_high_5 (Length: 493)
Name: NF17712_high_5
Description: NF17712
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17712_high_5 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 401; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 1 - 493
Target Start/End: Complemental strand, 46838649 - 46838155
Alignment:
| Q |
1 |
gtgtatagaagtttcattttggtttgtttcaacaattatttcaagaaattct--attcaatcgtgcaaaataacttctcaaactcataaaaatagtcctc |
98 |
Q |
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| T |
46838649 |
gtgtatagaagtttcattttggtt-gtttcaacaattatttcaagaaattctcaattcaatcgtgcaaaataacttctcaaactcataaaaatagtcctc |
46838551 |
T |
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| Q |
99 |
catgacgaagtcttcatctttcggttggccaataaccgttccaaactcccttgcatgatcttagagattcagttattcttctcaaactcatgaaaaaagt |
198 |
Q |
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| T |
46838550 |
catgacgaagttttcatctttcggttggccaataaccgttccaaactcccttgcacgatcttagagattcagttatccttctcaaactcatgaaaaaagt |
46838451 |
T |
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| Q |
199 |
tctactaggggagggattagggattgttgattgtactattacataatcattttcttgaggnnnnnnnntaa-acatcgaagtatacatatcaaatataga |
297 |
Q |
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| T |
46838450 |
tctactaggggagggattagttattgttgattgtactatcacataatcattttcttgaggaaaaaaaaaaacaaatcgaagtatacatatcaaatatgga |
46838351 |
T |
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| Q |
298 |
aatcatgatagctggtaacaatttaatgaaataaactttacatatactcatttgagttttgaatcacattcacagccagaatcatctactactaatctag |
397 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46838350 |
aatcatgatagctggtaacaatttaatgaaataaactttacatatactcatttttgttttgaatcacattcacagccagaatcatctactactaatctag |
46838251 |
T |
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| Q |
398 |
tatcagcaaacattaaaaggtaccattactctttttctgttttggtaaattctccactggatacttcccaacaaaatgaattaggctgacaggact |
493 |
Q |
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| T |
46838250 |
tatcagcaaacattaaaaggtaccattactctttttctgttttggtaaattctccactggatacttcccaacaaaatgaattaggctgacaggact |
46838155 |
T |
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