View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17712_high_8 (Length: 441)
Name: NF17712_high_8
Description: NF17712
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17712_high_8 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 346; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 16 - 441
Target Start/End: Complemental strand, 51461363 - 51460939
Alignment:
| Q |
16 |
caactgaaacatcaaagagaattagagcatcatgtacacttaaaacgaacatcatcctacgcaacaatattgcctttccaacaataagtatgccaatgca |
115 |
Q |
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| T |
51461363 |
caactgaaacatcaaagagaatcaaagcatcatgtacacttaaaacgaacaccatcctacggaacaatattgactttccagcaataagtatgtcaatgca |
51461264 |
T |
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| Q |
116 |
aatgtcagaaacacagtgtaaaccatagtaaatgatgcatttaataaagaaacttcaacttgtctcttgtagaagagcatatgtcagtacacttaaatct |
215 |
Q |
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| T |
51461263 |
aatgtcagaaacacattgtaaaccaaagtaaatgatgcatttaataaagaaacttcaacttgactcttgtagaagagcatatgtcagtacacttaa-tct |
51461165 |
T |
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| Q |
216 |
gcacaatcccgacaaaacttgaacttggaccaccccatgaaacctttggttgaatagctatgtgtatatttatccgtctcatttctacctacaagcagtt |
315 |
Q |
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||||||||||| ||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||| |||| |||||||||||| ||||||||||| |
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| T |
51461164 |
gcacaatcccggcaaaacttgaacttggaccacccaatgaaacttttggttgaatagctatgtgtatattcatccatctcatttctacatacaagcagtt |
51461065 |
T |
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| Q |
316 |
acaactacaagatagagtaaaaactctattgtcggccaaatagaaatgtttagcaatttttcaattaaaaccaataataagatataaatacacacaagct |
415 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51461064 |
tcaactacaagatagagtaaaaactctattgtcggccaaatagaaatgtttagcaatttttcaattaaaaccaataataagatataaatacacacaagct |
51460965 |
T |
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| Q |
416 |
ccaaatttttggacatttcttgacct |
441 |
Q |
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| T |
51460964 |
tcaaatttttggacatttcttgacct |
51460939 |
T |
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