View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17712_low_10 (Length: 398)
Name: NF17712_low_10
Description: NF17712
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17712_low_10 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 367; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 12 - 382
Target Start/End: Original strand, 27318728 - 27319098
Alignment:
| Q |
12 |
ctgagatgaatcatgtgattgatgatgttattattgtaacagatattggtgtgatgagtggagcagccatctatataaaaagagaccttaaagtaacaga |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27318728 |
ctgagatgaatcatgtgattgatgatgttattattgtaacagatattggtgtgatgagtggagcagccatctatataaaaagagaccttaaagtaacaga |
27318827 |
T |
|
| Q |
112 |
cgtgcaaattgaaattctcctaggtatcataaacctatattctcccataggttcttacattgcagggagactttctgactggattggtcgacgttacacg |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27318828 |
cgtgcaaattgaaattctcctaggtatcataaacctatattctcccataggttcttacattgcagggagactttctgactggattggtcgacgttacacg |
27318927 |
T |
|
| Q |
212 |
attgtccttgctggtttaattttcttcgtcggagctgtacttatgggactttctccaaactatgcatttctcatgtttggtcgtttctttgctggtgttg |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27318928 |
attgtccttgctggtttaattttcttcgtcggagctgtacttatgggactttctccaaactatgcatttctcatgtttggtcgtttctttgctggtgttg |
27319027 |
T |
|
| Q |
312 |
gcatagggtttgccttcttgattgctcctgtttatacctctgaagtctccccaacttcgtctcgtggcttc |
382 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
27319028 |
gcatagggtttgccttcttgattgctcctgtttatacctctgaagtctccccaacttcatctcgtggcttc |
27319098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 52 - 123
Target Start/End: Original strand, 26152712 - 26152783
Alignment:
| Q |
52 |
agatattggtgtgatgagtggagcagccatctatataaaaagagaccttaaagtaacagacgtgcaaattga |
123 |
Q |
| |
|
|||||||||||| |||||||||||||| ||||| ||||||||||||||||||||| | |||| | ||||||| |
|
|
| T |
26152712 |
agatattggtgttatgagtggagcagcaatctacataaaaagagaccttaaagtatccgacgggaaaattga |
26152783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 281 - 381
Target Start/End: Original strand, 26152941 - 26153041
Alignment:
| Q |
281 |
ctcatgtttggtcgtttctttgctggtgttggcatagggtttgccttcttgattgctcctgtttatacctctgaagtctccccaacttcgtctcgtggct |
380 |
Q |
| |
|
||||||||||||||||| |||| || |||||||| || | ||| || ||||||| || || |||||| ||||||||||||| |||| ||||| |||| |
|
|
| T |
26152941 |
ctcatgtttggtcgttttgttgccggagttggcatcggctatgctctcatgattgccccggtctataccgctgaagtctcccccgcttcctctcgcggct |
26153040 |
T |
|
| Q |
381 |
t |
381 |
Q |
| |
|
| |
|
|
| T |
26153041 |
t |
26153041 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 51 - 307
Target Start/End: Original strand, 54348009 - 54348265
Alignment:
| Q |
51 |
cagatattggtgtgatgagtggagcagccatctatataaaaagagaccttaaagtaacagacgtgcaaattgaaattctcctaggtatcataaacctata |
150 |
Q |
| |
|
|||||||||| |||||||||||||||| || || |||||||||||||| ||| || | | || ||||||||||| || |||| ||||| ||||| | |
|
|
| T |
54348009 |
cagatattggggtgatgagtggagcagtgatatacataaaaagagacctcaaactatctaatgtccaaattgaaatcctagtaggcatcatcaacctttt |
54348108 |
T |
|
| Q |
151 |
ttctcccataggttcttacattgcagggagactttctgactggattggtcgacgttacacgattgtccttgctggtttaattttcttcgtcggagctgta |
250 |
Q |
| |
|
|| |||||||| | | | || || || ||||||||||||||||| |||||||| || ||||||||||| | || ||||||| || || | |
|
|
| T |
54348109 |
ctccttaataggttcctgcctcgccggccgaacctctgactggattggtcgccgttacaccatcgtccttgctggctccatcttcttcgcaggcgcactc |
54348208 |
T |
|
| Q |
251 |
cttatgggactttctccaaactatgcatttctcatgtttggtcgtttctttgctggt |
307 |
Q |
| |
|
|| |||||| | ||||| |||| ||| ||||||||||||| ||||||| |||||||| |
|
|
| T |
54348209 |
ctcatgggattctctcccaactttgcctttctcatgtttgctcgtttcattgctggt |
54348265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University