View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17712_low_13 (Length: 387)

Name: NF17712_low_13
Description: NF17712
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17712_low_13
NF17712_low_13
[»] chr3 (5 HSPs)
chr3 (1-109)||(18201849-18201957)
chr3 (1-66)||(18201969-18202034)
chr3 (243-339)||(9775129-9775225)
chr3 (54-109)||(18201775-18201830)
chr3 (231-315)||(27437939-27438024)
[»] chr7 (7 HSPs)
chr7 (231-342)||(48629422-48629534)
chr7 (1-104)||(35345044-35345144)
chr7 (340-379)||(23109959-23109998)
chr7 (340-379)||(31076612-31076651)
chr7 (340-379)||(47195027-47195066)
chr7 (1-31)||(35345175-35345205)
chr7 (342-379)||(44083514-44083551)
[»] scaffold0186 (1 HSPs)
scaffold0186 (243-339)||(2723-2820)
[»] chr1 (9 HSPs)
chr1 (231-340)||(21859704-21859814)
chr1 (1-104)||(4009436-4009536)
chr1 (245-339)||(22916284-22916379)
chr1 (275-339)||(1390393-1390457)
chr1 (340-379)||(27525466-27525505)
chr1 (1-31)||(4009567-4009597)
chr1 (41-82)||(37907219-37907260)
chr1 (42-82)||(37907259-37907299)
chr1 (42-82)||(37907298-37907338)
[»] chr6 (6 HSPs)
chr6 (1-104)||(2272105-2272205)
chr6 (244-340)||(14958901-14958998)
chr6 (218-346)||(33596402-33596531)
chr6 (243-315)||(8877850-8877922)
chr6 (340-377)||(34551488-34551525)
chr6 (1-31)||(2272236-2272266)
[»] chr5 (2 HSPs)
chr5 (1-104)||(39343592-39343692)
chr5 (1-31)||(39343723-39343753)
[»] chr4 (3 HSPs)
chr4 (231-315)||(4103241-4103326)
chr4 (340-379)||(49349110-49349149)
chr4 (340-380)||(1807819-1807859)
[»] scaffold0164 (1 HSPs)
scaffold0164 (249-340)||(29930-30021)
[»] scaffold0003 (1 HSPs)
scaffold0003 (249-342)||(110997-111091)
[»] chr2 (4 HSPs)
chr2 (260-340)||(27513751-27513832)
chr2 (340-379)||(6756697-6756736)
chr2 (340-379)||(7126110-7126149)
chr2 (340-379)||(21812648-21812687)
[»] chr8 (3 HSPs)
chr8 (245-339)||(15327849-15327943)
chr8 (245-339)||(15508218-15508312)
chr8 (340-379)||(41012015-41012054)
[»] scaffold0131 (1 HSPs)
scaffold0131 (249-315)||(10298-10365)
[»] scaffold0187 (3 HSPs)
scaffold0187 (41-82)||(31817-31858)
scaffold0187 (42-82)||(31739-31779)
scaffold0187 (42-82)||(31778-31818)


Alignment Details
Target: chr3 (Bit Score: 97; Significance: 1e-47; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 1 - 109
Target Start/End: Complemental strand, 18201957 - 18201849
Alignment:
Q  1 cgatagagatgacggcggagacggaagcaagtgcgaatgagaggattgagtgcgagatgaaaattttgggggatcggtttagactgattggaaaaatttg 100  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||    
T  18201957 cgatagagatgacggcggagacggaagcaagtgagaatgagaggattgagtgcgagatgaaaattttgggggttaggtttagactgattggaaaaatttg 18201858  T
Q  101 agtgtgaga 109  Q
    |||||||||    
T  18201857 agtgtgaga 18201849  T

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Target: chr3; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 18202034 - 18201969
Alignment:
Q  1 cgatagagatgacggcggagacggaagcaagtgcgaatgagaggattgagtgcgagatgaaaattt 66  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18202034 cgatagagatgacggtggagacggaagcaagtgcgaatgagaggattgagtgcgagatgaaaattt 18201969  T

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Target: chr3; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 243 - 339
Target Start/End: Complemental strand, 9775225 - 9775129
Alignment:
Q  243 caaacagtcgcaacaactgttgcaaaaatgcattt-gaggccgttatatggtaagggtcgcagatgaagtgtcgtaaaatgcagattttcttgtagtg 339  Q
    ||||||| |||||||||| |||||||||||||||| ||||| ||| || | ||||||||||||||||||||||| ||||||||| |||||||||||||    
T  9775225 caaacagccgcaacaactattgcaaaaatgcattttgaggcggttgtaagttaagggtcgcagatgaagtgtcgcaaaatgcag-ttttcttgtagtg 9775129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 54 - 109
Target Start/End: Complemental strand, 18201830 - 18201775
Alignment:
Q  54 gagatgaaaattttgggggatcggtttagactgattggaaaaatttgagtgtgaga 109  Q
    ||||||||||||||||||| | ||||||||||||||||||||||||||||||||||    
T  18201830 gagatgaaaattttgggggttaggtttagactgattggaaaaatttgagtgtgaga 18201775  T

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Target: chr3; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 231 - 315
Target Start/End: Complemental strand, 27438024 - 27437939
Alignment:
Q  231 cgacggtttacccaaacagtcgcaacaactgttgcaaaaatgca-tttgaggccgttatatggtaagggtcgcagatgaagtgtcg 315  Q
    |||||||| |||| ||||| |||||||||||||||||||||||| |||||||| |||  | ||||||| |||||||||||||||||    
T  27438024 cgacggttcaccctaacagccgcaacaactgttgcaaaaatgcactttgaggcagttgcaaggtaaggatcgcagatgaagtgtcg 27437939  T

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Target: chr7 (Bit Score: 65; Significance: 2e-28; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 231 - 342
Target Start/End: Complemental strand, 48629534 - 48629422
Alignment:
Q  231 cgacggtttacccaaacagtcgcaacaactgttgcaaaaatgcattt-gaggccgttatatggtaagggtcgcagatgaagtgtcgtaaaatgcagattt 329  Q
    |||||||| | | |||||| ||||||||||||||||||||||||||| ||||| ||| || | ||||||||||||||||||||||| ||||||||| |||    
T  48629534 cgacggttcatcaaaacagccgcaacaactgttgcaaaaatgcattttgaggcagttgtaagttaagggtcgcagatgaagtgtcgcaaaatgcagtttt 48629435  T
Q  330 tcttgtagtgtat 342  Q
    |||||||||||||    
T  48629434 tcttgtagtgtat 48629422  T

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Target: chr7; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 35345144 - 35345044
Alignment:
Q  1 cgatagagatgacggcggagacggaagcaagtgcgaatgagaggattgagtgcgagatgaaaattttgggggatcggtttagactgattggaaaaatttg 100  Q
    |||||||||||||||||||||||||||||||    |  || ||||||||||| ||||||||||||||||||| |  ||||||||||||||||||||| ||    
T  35345144 cgatagagatgacggcggagacggaagcaaga---agcgataggattgagtgggagatgaaaattttgggggttaagtttagactgattggaaaaatctg 35345048  T
Q  101 agtg 104  Q
    ||||    
T  35345047 agtg 35345044  T

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Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 340 - 379
Target Start/End: Original strand, 23109959 - 23109998
Alignment:
Q  340 tatggacagacaatctcactcattccatgcctatgcttct 379  Q
    |||||||||||||||||||||||||||||| |||||||||    
T  23109959 tatggacagacaatctcactcattccatgcttatgcttct 23109998  T

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Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 340 - 379
Target Start/End: Original strand, 31076612 - 31076651
Alignment:
Q  340 tatggacagacaatctcactcattccatgcctatgcttct 379  Q
    |||||||||||||||||||||||||||||| |||||||||    
T  31076612 tatggacagacaatctcactcattccatgcttatgcttct 31076651  T

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Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 340 - 379
Target Start/End: Original strand, 47195027 - 47195066
Alignment:
Q  340 tatggacagacaatctcactcattccatgcctatgcttct 379  Q
    |||||||||||||||||||||||||||||| || ||||||    
T  47195027 tatggacagacaatctcactcattccatgcttacgcttct 47195066  T

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Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 35345205 - 35345175
Alignment:
Q  1 cgatagagatgacggcggagacggaagcaag 31  Q
    |||||||||||||||||||||||||||||||    
T  35345205 cgatagagatgacggcggagacggaagcaag 35345175  T

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Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 342 - 379
Target Start/End: Complemental strand, 44083551 - 44083514
Alignment:
Q  342 tggacagacaatctcactcattccatgcctatgcttct 379  Q
    |||||||||||||||||||||||||||| |||| ||||    
T  44083551 tggacagacaatctcactcattccatgcttatgtttct 44083514  T

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Target: scaffold0186 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: scaffold0186
Description:

Target: scaffold0186; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 243 - 339
Target Start/End: Original strand, 2723 - 2820
Alignment:
Q  243 caaacagtcgcaacaactgttgcaaaaatgcattt-gaggccgttatatggtaagggtcgcagatgaagtgtcgtaaaatgcagattttcttgtagtg 339  Q
    ||||||| ||||||||||||||||||||||||||| ||||| ||| || | ||||||||||||||||||||||| ||||||||| |||||||||||||    
T  2723 caaacagccgcaacaactgttgcaaaaatgcattttgaggcggttgtaagttaagggtcgcagatgaagtgtcgcaaaatgcagtttttcttgtagtg 2820  T

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Target: chr1 (Bit Score: 59; Significance: 7e-25; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 231 - 340
Target Start/End: Original strand, 21859704 - 21859814
Alignment:
Q  231 cgacggtttacccaaacagtcgcaacaactgttgcaaaaatgcattt-gaggccgttatatggtaagggtcgcagatgaagtgtcgtaaaatgcagattt 329  Q
    |||||||| | | |||||| ||||||||||||||||||||||||||| ||||| ||| || | ||||| ||||||||||||||||| ||||||||| |||    
T  21859704 cgacggttcatcaaaacagccgcaacaactgttgcaaaaatgcattttgaggcagttgtaagttaaggttcgcagatgaagtgtcgcaaaatgcagtttt 21859803  T
Q  330 tcttgtagtgt 340  Q
    |||||||||||    
T  21859804 tcttgtagtgt 21859814  T

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Target: chr1; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 4009536 - 4009436
Alignment:
Q  1 cgatagagatgacggcggagacggaagcaagtgcgaatgagaggattgagtgcgagatgaaaattttgggggatcggtttagactgattggaaaaatttg 100  Q
    |||||||||||||||||||||||||||||||    |  || ||||||||||| ||||||||||||||||||| | |||||||||||||||||||||| ||    
T  4009536 cgatagagatgacggcggagacggaagcaaga---agcgataggattgagtgggagatgaaaattttgggggttaggtttagactgattggaaaaatctg 4009440  T
Q  101 agtg 104  Q
    ||||    
T  4009439 agtg 4009436  T

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Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 245 - 339
Target Start/End: Complemental strand, 22916379 - 22916284
Alignment:
Q  245 aacagtcgcaacaactgttgcaaaaatgca-tttgaggccgttatatggtaagggtcgcagatgaagtgtcgtaaaatgcagattttcttgtagtg 339  Q
    ||||||||||||||| ||| |||||||||| |||||| | |||||| |||| ||||||| ||||| |||||| ||| ||  |||||||||||||||    
T  22916379 aacagtcgcaacaaccgtttcaaaaatgcactttgagacagttataaggtaggggtcgctgatgaggtgtcgcaaattgatgattttcttgtagtg 22916284  T

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Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 275 - 339
Target Start/End: Complemental strand, 1390457 - 1390393
Alignment:
Q  275 tttgaggccgttatatggtaagggtcgcagatgaagtgtcgtaaaatgcagattttcttgtagtg 339  Q
    |||||||| |||||| | ||||||||||||||||||||||| ||  ||||| |||||||||||||    
T  1390457 tttgaggcagttataagttaagggtcgcagatgaagtgtcgcaatttgcagtttttcttgtagtg 1390393  T

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Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 340 - 379
Target Start/End: Original strand, 27525466 - 27525505
Alignment:
Q  340 tatggacagacaatctcactcattccatgcctatgcttct 379  Q
    |||||||||||||||||||||||||||||| |||||||||    
T  27525466 tatggacagacaatctcactcattccatgcttatgcttct 27525505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 4009597 - 4009567
Alignment:
Q  1 cgatagagatgacggcggagacggaagcaag 31  Q
    |||||||||||||||||||||||||||||||    
T  4009597 cgatagagatgacggcggagacggaagcaag 4009567  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 41 - 82
Target Start/End: Original strand, 37907219 - 37907260
Alignment:
Q  41 gaggattgagtgcgagatgaaaattttgggggatcggtttag 82  Q
    |||||||||||| ||||||||||||||||||| | |||||||    
T  37907219 gaggattgagtgggagatgaaaattttgggggttaggtttag 37907260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 42 - 82
Target Start/End: Original strand, 37907259 - 37907299
Alignment:
Q  42 aggattgagtgcgagatgaaaattttgggggatcggtttag 82  Q
    ||||||||||| ||||||||||||||||||| | |||||||    
T  37907259 aggattgagtgggagatgaaaattttgggggttaggtttag 37907299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 42 - 82
Target Start/End: Original strand, 37907298 - 37907338
Alignment:
Q  42 aggattgagtgcgagatgaaaattttgggggatcggtttag 82  Q
    ||||||||||| ||||||||||||||||||| | |||||||    
T  37907298 aggattgagtgggagatgaaaattttgggggttaggtttag 37907338  T

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Target: chr6 (Bit Score: 58; Significance: 3e-24; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 2272205 - 2272105
Alignment:
Q  1 cgatagagatgacggcggagacggaagcaagtgcgaatgagaggattgagtgcgagatgaaaattttgggggatcggtttagactgattggaaaaatttg 100  Q
    |||||||||||||||||||||||||||||||    |  || ||||||||||| ||||||||||||||||||| | |||||||||||||||||||||| ||    
T  2272205 cgatagagatgacggcggagacggaagcaaga---agcgataggattgagtgggagatgaaaattttgggggttaggtttagactgattggaaaaatctg 2272109  T
Q  101 agtg 104  Q
    ||||    
T  2272108 agtg 2272105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 244 - 340
Target Start/End: Complemental strand, 14958998 - 14958901
Alignment:
Q  244 aaacagtcgcaacaactgttgcaaaaatgcattt-gaggccgttatatggtaagggtcgcagatgaagtgtcgtaaaatgcagattttcttgtagtgt 340  Q
    |||||| ||||||||| ||||||||||||||||| ||||| ||| || | ||||||||||||||||||||||| ||||||||| ||||||||||||||    
T  14958998 aaacagccgcaacaaccgttgcaaaaatgcattttgaggcagttgtaagttaagggtcgcagatgaagtgtcgcaaaatgcagtttttcttgtagtgt 14958901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 218 - 346
Target Start/End: Original strand, 33596402 - 33596531
Alignment:
Q  218 caaagaaaaactacgacggtttacccaaacagtcgcaacaactgttgcaaaaatgcattt-gaggccgttatatggtaagggtcgcagatgaagtgtcgt 316  Q
    |||||||||  | |||| ||| ||||||||||| |||||||| ||||||||  | ||||| ||||| |||||| |||| |||||||||||||||||||      
T  33596402 caaagaaaacttgcgacagttgacccaaacagttgcaacaaccgttgcaaatgttcattttgaggcagttataaggtaggggtcgcagatgaagtgtcac 33596501  T
Q  317 aaaatgcagattttcttgtagtgtatggac 346  Q
    ||  ||| |||||||||||||||| |||||    
T  33596502 aatttgctgattttcttgtagtgtgtggac 33596531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 243 - 315
Target Start/End: Complemental strand, 8877922 - 8877850
Alignment:
Q  243 caaacagtcgcaacaactgttgcaaaaatgcatttgaggccgttatatggtaagggtcgcagatgaagtgtcg 315  Q
    ||||||| |||||||||||||||||||||||||||||||| |||  | || | ||||||||||||||||||||    
T  8877922 caaacagccgcaacaactgttgcaaaaatgcatttgaggcagttgcaaggcatgggtcgcagatgaagtgtcg 8877850  T

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Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 340 - 377
Target Start/End: Complemental strand, 34551525 - 34551488
Alignment:
Q  340 tatggacagacaatctcactcattccatgcctatgctt 377  Q
    |||||||||||||||||||||||||||||| |||||||    
T  34551525 tatggacagacaatctcactcattccatgcttatgctt 34551488  T

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Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 2272266 - 2272236
Alignment:
Q  1 cgatagagatgacggcggagacggaagcaag 31  Q
    |||||||||||||||||||||||||||||||    
T  2272266 cgatagagatgacggcggagacggaagcaag 2272236  T

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Target: chr5 (Bit Score: 58; Significance: 3e-24; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 39343692 - 39343592
Alignment:
Q  1 cgatagagatgacggcggagacggaagcaagtgcgaatgagaggattgagtgcgagatgaaaattttgggggatcggtttagactgattggaaaaatttg 100  Q
    |||||||||||||||||||||||||||||||    |  || ||||||||||| ||||||||||||||||||| | |||||||||||||||||||||| ||    
T  39343692 cgatagagatgacggcggagacggaagcaaga---agcgataggattgagtgggagatgaaaattttgggggttaggtttagactgattggaaaaatctg 39343596  T
Q  101 agtg 104  Q
    ||||    
T  39343595 agtg 39343592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 39343753 - 39343723
Alignment:
Q  1 cgatagagatgacggcggagacggaagcaag 31  Q
    |||||||||||||||||||||||||||||||    
T  39343753 cgatagagatgacggcggagacggaagcaag 39343723  T

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Target: chr4 (Bit Score: 58; Significance: 3e-24; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 231 - 315
Target Start/End: Complemental strand, 4103326 - 4103241
Alignment:
Q  231 cgacggtttacccaaacagtcgcaacaactgttgcaaaaatgca-tttgaggccgttatatggtaagggtcgcagatgaagtgtcg 315  Q
    ||||||||||||| ||||| |||||||||||||||||||||||| |||||||| ||| || |||||||||||||||||||||||||    
T  4103326 cgacggtttaccctaacagccgcaacaactgttgcaaaaatgcactttgaggcagttgtaaggtaagggtcgcagatgaagtgtcg 4103241  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 340 - 379
Target Start/End: Original strand, 49349110 - 49349149
Alignment:
Q  340 tatggacagacaatctcactcattccatgcctatgcttct 379  Q
    |||||||||||||||||||||||||||||| |||||||||    
T  49349110 tatggacagacaatctcactcattccatgcttatgcttct 49349149  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 340 - 380
Target Start/End: Complemental strand, 1807859 - 1807819
Alignment:
Q  340 tatggacagacaatctcactcattccatgcctatgcttctc 380  Q
    |||||||||||||||||||||||| ||| | ||||||||||    
T  1807859 tatggacagacaatctcactcatttcatacttatgcttctc 1807819  T

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Target: scaffold0164 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: scaffold0164
Description:

Target: scaffold0164; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 249 - 340
Target Start/End: Original strand, 29930 - 30021
Alignment:
Q  249 gtcgcaacaactgttgcaaaaatgcatttgaggccgttatatggtaagggtcgcagatgaagtgtcgtaaaatgcagattttcttgtagtgt 340  Q
    |||||||||||||||||||| ||||| ||||||| |||| | |||||||||||||  ||  |||||| ||||||| |||||| |||||||||    
T  29930 gtcgcaacaactgttgcaaatatgcacttgaggcggttaaaaggtaagggtcgcaattgcggtgtcgcaaaatgctgatttttttgtagtgt 30021  T

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Target: scaffold0003 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 249 - 342
Target Start/End: Complemental strand, 111091 - 110997
Alignment:
Q  249 gtcgcaacaactgttgcaaaaatgcat-ttgaggccgttatatggtaagggtcgcagatgaagtgtcgtaaaatgcagattttcttgtagtgtat 342  Q
    ||||||||||||||||| || |||||  ||||||| |||||| |||||||||||||  || ||||||| ||||||| |||||||||||| |||||    
T  111091 gtcgcaacaactgttgcgaatatgcacattgaggcagttataaggtaagggtcgcaattgcagtgtcgcaaaatgctgattttcttgtattgtat 110997  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 260 - 340
Target Start/End: Original strand, 27513751 - 27513832
Alignment:
Q  260 tgttgcaaaaatgca-tttgaggccgttatatggtaagggtcgcagatgaagtgtcgtaaaatgcagattttcttgtagtgt 340  Q
    ||||||||||||||| |||||||| |||  |  |||||||||||||||||||||||| ||  ||||| ||||||||||||||    
T  27513751 tgttgcaaaaatgcactttgaggcagttgcaaagtaagggtcgcagatgaagtgtcgcaatttgcagtttttcttgtagtgt 27513832  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 340 - 379
Target Start/End: Original strand, 6756697 - 6756736
Alignment:
Q  340 tatggacagacaatctcactcattccatgcctatgcttct 379  Q
    |||||||||||||||||||||||||||||| |||||||||    
T  6756697 tatggacagacaatctcactcattccatgcttatgcttct 6756736  T

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Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 340 - 379
Target Start/End: Original strand, 7126110 - 7126149
Alignment:
Q  340 tatggacagacaatctcactcattccatgcctatgcttct 379  Q
    |||||||||||||||||||||||||||||| |||||||||    
T  7126110 tatggacagacaatctcactcattccatgcttatgcttct 7126149  T

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Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 340 - 379
Target Start/End: Original strand, 21812648 - 21812687
Alignment:
Q  340 tatggacagacaatctcactcattccatgcctatgcttct 379  Q
    |||||||||||||||||||||||||||||| |||||||||    
T  21812648 tatggacagacaatctcactcattccatgcttatgcttct 21812687  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 245 - 339
Target Start/End: Complemental strand, 15327943 - 15327849
Alignment:
Q  245 aacagtcgcaacaactgttgcaaaaatgca-tttgaggccgttatatggtaagggtcgcagatgaagtgtcgtaaaatgcagattttcttgtagtg 339  Q
    ||||| |||||||| ||||||||||||||| |||||||| |||  |  |||||||||||||||||||||||  ||  ||||| |||||||||||||    
T  15327943 aacagccgcaacaa-tgttgcaaaaatgcactttgaggcagttgcaaagtaagggtcgcagatgaagtgtcacaatttgcagtttttcttgtagtg 15327849  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 245 - 339
Target Start/End: Complemental strand, 15508312 - 15508218
Alignment:
Q  245 aacagtcgcaacaactgttgcaaaaatgca-tttgaggccgttatatggtaagggtcgcagatgaagtgtcgtaaaatgcagattttcttgtagtg 339  Q
    ||||| |||||||| ||||||||||||||| |||||||| |||  |  |||||||||||||||||||||||  ||  ||||| |||||||||||||    
T  15508312 aacagccgcaacaa-tgttgcaaaaatgcactttgaggcagttgcaaagtaagggtcgcagatgaagtgtcacaatttgcagtttttcttgtagtg 15508218  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 340 - 379
Target Start/End: Original strand, 41012015 - 41012054
Alignment:
Q  340 tatggacagacaatctcactcattccatgcctatgcttct 379  Q
    |||||| ||||||||||||||||||||||| |||||||||    
T  41012015 tatggatagacaatctcactcattccatgcttatgcttct 41012054  T

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Target: scaffold0131 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0131
Description:

Target: scaffold0131; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 249 - 315
Target Start/End: Complemental strand, 10365 - 10298
Alignment:
Q  249 gtcgcaacaactgttgcaaaaatgcat-ttgaggccgttatatggtaagggtcgcagatgaagtgtcg 315  Q
    |||||| |||||||||||||  ||||  ||||||| |||||| ||||||||||||| |||||||||||    
T  10365 gtcgcagcaactgttgcaaagttgcacattgaggcagttataaggtaagggtcgcaaatgaagtgtcg 10298  T

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Target: scaffold0187 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: scaffold0187
Description:

Target: scaffold0187; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 41 - 82
Target Start/End: Complemental strand, 31858 - 31817
Alignment:
Q  41 gaggattgagtgcgagatgaaaattttgggggatcggtttag 82  Q
    |||||||||||| ||||||||||||||||||| | |||||||    
T  31858 gaggattgagtgggagatgaaaattttgggggttaggtttag 31817  T

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Target: scaffold0187; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 42 - 82
Target Start/End: Complemental strand, 31779 - 31739
Alignment:
Q  42 aggattgagtgcgagatgaaaattttgggggatcggtttag 82  Q
    ||||||||||| ||||||||||||||||||| | |||||||    
T  31779 aggattgagtgggagatgaaaattttgggggttaggtttag 31739  T

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Target: scaffold0187; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 42 - 82
Target Start/End: Complemental strand, 31818 - 31778
Alignment:
Q  42 aggattgagtgcgagatgaaaattttgggggatcggtttag 82  Q
    ||||||||||| ||||||||||||||||||| | |||||||    
T  31818 aggattgagtgggagatgaaaattttgggggttaggtttag 31778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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