View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17712_low_15 (Length: 363)
Name: NF17712_low_15
Description: NF17712
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17712_low_15 |
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Alignment Details
Target: chr5 (Bit Score: 114; Significance: 9e-58; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 13 - 170
Target Start/End: Original strand, 26164262 - 26164419
Alignment:
| Q |
13 |
gagatgaagttttcccacaagagatgcaagtttgtttacgattcaggtttcaaaagtgtactaataggtaaactttaattttaccgtgaagatccttttg |
112 |
Q |
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| T |
26164262 |
gagatgaagttttcccaaaagagatgcaagtttgtttacgattcaggtttcaaaagtgtactaataggtaaactttaattttaccgtgaagatccttttg |
26164361 |
T |
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| Q |
113 |
attcatgaannnnnnnngcaaaagaaccatttatatcatataattaatatgcgtcttt |
170 |
Q |
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| T |
26164362 |
gttcatgagaaaattttgcaaaagaaccatttatatcaaataataaatatgcgtcttt |
26164419 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 229 - 326
Target Start/End: Original strand, 26164482 - 26164579
Alignment:
| Q |
229 |
aaataaactgaaattgaccaaacagttatttaatttcaaatgaattaaaatagtggtaagtagannnnnnncaatcaaaagtgagcgagggtaggttg |
326 |
Q |
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| T |
26164482 |
aaataaactgaaattgaccaaacagttatttaatttcaaatgaattaaaatagtggtaagtagatttttttcaatcaaaagtgagcgagtgtaggttg |
26164579 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 163 - 204
Target Start/End: Original strand, 26164442 - 26164483
Alignment:
| Q |
163 |
gcgtctttatactaatatcataccaaaatcaagttttattaa |
204 |
Q |
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| T |
26164442 |
gcgtctttatactaatatcataccaaaatcaagttttattaa |
26164483 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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