View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17712_low_21 (Length: 299)
Name: NF17712_low_21
Description: NF17712
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17712_low_21 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 248; Significance: 1e-138; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 23 - 286
Target Start/End: Complemental strand, 2025823 - 2025560
Alignment:
| Q |
23 |
cggtatagctgagaatccgaaaaattctattgatcaaatgtgtattcgtttcaatatttgagttattttttcaaggttaggttctcttttgctatagtgt |
122 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
2025823 |
cggtatagctgagaatccgaaaaattctattgatcaaatgtgtattcgtttcaatatttgagttattttttcaaggttaggttctcttctgctatagtgt |
2025724 |
T |
|
| Q |
123 |
taatttatggatatgctctccattttctcgaacataaggcaaacatcgcattgctaatattttgatccttatcaatatcgcgcaagaatgagccaaccga |
222 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| |
|
|
| T |
2025723 |
taatttatggatatgctctccattttctcgaacataaggcaaacatcgcattgctaatattttgatcgttatcgatatcgcgcaagaatgagccaaccga |
2025624 |
T |
|
| Q |
223 |
atttcgtattagaaatatactccaagataattcctgttcatatggatacgagcacatcaaatat |
286 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2025623 |
atttcatattagaaatatactccaagataattcctgttcatatggatacgagcacatcaaatat |
2025560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University