View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17712_low_22 (Length: 271)
Name: NF17712_low_22
Description: NF17712
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17712_low_22 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 9 - 271
Target Start/End: Complemental strand, 14856180 - 14855918
Alignment:
| Q |
9 |
taggctctaaccctaacagtagttggattgagaaactcaattattattgttttttctctatagaaccatgacgactcaattatatataaatttcaacgca |
108 |
Q |
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| T |
14856180 |
taggctctaaccctaacagtagttggattgagaaactcaattattattgttttttctctatagaactatgacgactcaattatatataaatttcaacgca |
14856081 |
T |
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| Q |
109 |
taggacatgcacaacattttaccaaatataataataacaagaaagaagaattgaagaactactcacactcactcatatatatattcttcagaatctaccc |
208 |
Q |
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| T |
14856080 |
taggacatgcacaacattttaccaaatataataataacaagaaagaagaattgaagaactactcacactcactcatatatatattcttcagaatctaccc |
14855981 |
T |
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| Q |
209 |
acaggagctgaaagaaaataaaacaaacacgtggaacgacaaaggagcagaagattatcattg |
271 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14855980 |
acaggagctgaaagaaaataaaacaaacacgtggaacgacaaaggagcagaagattatcattg |
14855918 |
T |
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