View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17712_low_23 (Length: 264)
Name: NF17712_low_23
Description: NF17712
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17712_low_23 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 255; Significance: 1e-142; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 1 - 255
Target Start/End: Complemental strand, 29333117 - 29332863
Alignment:
| Q |
1 |
tttggttgaatcaagggaattttgatcttgtgtttgggagtatcttggaatggacttatcgggataaggaattgaagggattggcatacaatgcatcaat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29333117 |
tttggttgaatcaagggaattttgatcttgtgtttgggagtatcttggaatggacttatcgggataaggaattgaagggattggcatacaatgcatcaat |
29333018 |
T |
|
| Q |
101 |
ttcgttgatgttattgtcgcaggagcttaagagaacagatgtatgcgattttctgttgccgaatttgttgagtattatcgatgaacatggggaagaagag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29333017 |
ttcgttgatgttattgtcgcaggagcttaagagaacagatgtatgcgattttctgttgccgaatttgttgagtattatcgatgaacatggggaagaagag |
29332918 |
T |
|
| Q |
201 |
gttttggtggatagggttaagcgtttgggcgatttagttacgttggatgatgatg |
255 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29332917 |
gttttggtggatagggttaagcgtttgggcgatttagttacgttggatgatgatg |
29332863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 62 - 200
Target Start/End: Complemental strand, 29321862 - 29321724
Alignment:
| Q |
62 |
ggataaggaattgaagggattggcatacaatgcatcaatttcgttgatgttattgtcgcaggagcttaagagaacagatgtatgcgattttctgttgccg |
161 |
Q |
| |
|
|||| |||||||||| | |||||||| || ||||||| |||||||||||||||||||| |||| ||| |||||||||| |||| |||| |||| |||||| |
|
|
| T |
29321862 |
ggatcaggaattgaaagcattggcattcactgcatcactttcgttgatgttattgtcgaaggatcttcagagaacagacgtatacgatattctcttgccg |
29321763 |
T |
|
| Q |
162 |
aatttgttgagtattatcgatgaacatggggaagaagag |
200 |
Q |
| |
|
| |||||||| ||||||| || ||||||| ||||||||| |
|
|
| T |
29321762 |
attttgttgaatattatcaatcaacatggagaagaagag |
29321724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 62 - 252
Target Start/End: Complemental strand, 29304676 - 29304486
Alignment:
| Q |
62 |
ggataaggaattgaagggattggcatacaatgcatcaatttcgttgatgttattgtcgcaggagcttaagagaacagatgtatgcgattttctgttgccg |
161 |
Q |
| |
|
|||| |||||||||||| | |||||||| || |||||||||| ||||| |||||||| | || || || || || |||| | ||| ||| |||| | |
|
|
| T |
29304676 |
ggatcaggaattgaaggcactggcatacgattcatcaatttcattgatattattgtcaaatgattttctgaaaaatgaagtatccaattctctcttgcgg |
29304577 |
T |
|
| Q |
162 |
aatttgttgagtattatcgatgaacatggggaagaagaggttttggtggatagggttaagcgtttgggcgatttagttacgttggatgatg |
252 |
Q |
| |
|
||||| |||| ||| |||||| |||| || |||||||||||| ||||| ||||| |||| |||||| | || ||||||| |||||||||| |
|
|
| T |
29304576 |
aatttattgaatatcatcgatcaacacggagaagaagaggttctggtgaataggattaatcgtttgtgggaattagttaaattggatgatg |
29304486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University