View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17712_low_24 (Length: 263)
Name: NF17712_low_24
Description: NF17712
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17712_low_24 |
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Alignment Details
Target: chr7 (Bit Score: 143; Significance: 3e-75; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 18 - 181
Target Start/End: Original strand, 38665064 - 38665231
Alignment:
| Q |
18 |
catcatactcatctctgaaattttgaaccgcaatagaatgtgcaattgagaaaagtgtagagtcgtccactgttgatgcaaaggaactctaaagtgtgga |
117 |
Q |
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| T |
38665064 |
catcatactcatctctgaaattttgaaccgcaatagaatgtgcaattgagaaaagtgtagagtcatccactgttgatgcaaaggaactctaaagtgtgga |
38665163 |
T |
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| Q |
118 |
ggcatccactattgcaaactacgta----ccctctgtcttgtgttttacaacttactgttgttgtttt |
181 |
Q |
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| T |
38665164 |
ggcatccactattgcaaactacgtaccctccctctgtcttgtgttttacaacttattgttgttgtttt |
38665231 |
T |
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Target: chr7; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 199 - 254
Target Start/End: Original strand, 38665228 - 38665283
Alignment:
| Q |
199 |
tttttattgatctgtattgatgatgaatcatgtgttccttccttttccatattctt |
254 |
Q |
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| T |
38665228 |
tttttattgatctgtattgatgataaatcacgtgttccttccttttccattttctt |
38665283 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 73
Target Start/End: Complemental strand, 1154381 - 1154328
Alignment:
| Q |
19 |
atcatactcatctctgaaattttgaaccgcaatagaatgtgcaattgagaaaagt |
73 |
Q |
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| T |
1154381 |
atcatactcatctctgagattttgaaacgcaat-ggatgggcaattgagaaaagt |
1154328 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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