View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17712_low_25 (Length: 248)
Name: NF17712_low_25
Description: NF17712
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17712_low_25 |
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| [»] scaffold1787 (1 HSPs) |
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| [»] scaffold0060 (1 HSPs) |
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| [»] scaffold0016 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 206; Significance: 1e-113; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 18 - 227
Target Start/End: Complemental strand, 21189548 - 21189339
Alignment:
| Q |
18 |
agtttgattgtgtgattttaggaatatagaagagtgtttgatttaccaacttttaactgaaacaacccttttattacagttccagtttaactcggttgca |
117 |
Q |
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| T |
21189548 |
agtttgattgtgtgattttaggaatatagaagagtgtttgatctaccaacttttaactgaaacaacccttttattacagttccagtttaactcggttgca |
21189449 |
T |
|
| Q |
118 |
gtataataccaatcaagatacaaaaattagagtgtacaatattgtaccatttccctctctaaatttgtgacttttcggtgaaattacagtgtcaattgtt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21189448 |
gtataataccaatcaagatacaaaaattagagtgtacaatattgtaccatttccctctctaaatttgtgacttttcggtgaaattacagtgtcaattgtt |
21189349 |
T |
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| Q |
218 |
ttcactagag |
227 |
Q |
| |
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|||||||||| |
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| T |
21189348 |
ttcactagag |
21189339 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 107 - 223
Target Start/End: Complemental strand, 21205512 - 21205402
Alignment:
| Q |
107 |
actcggttgcagtataataccaatcaagatacaaaaattagagtgtacaatattgtaccatttccctctctaaatttgtgacttttcggtgaaattacag |
206 |
Q |
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||||||||||||| ||||||||||||||| |||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
21205512 |
actcggttgcagtttaataccaatcaagacacaaaaatc---gtgtacaat---gtaccatttccctctctaaatttgtgacttttcggtgaaattacgg |
21205419 |
T |
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| Q |
207 |
tgtcaattgttttcact |
223 |
Q |
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||||||||||||||||| |
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| T |
21205418 |
tgtcaattgttttcact |
21205402 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 18 - 70
Target Start/End: Original strand, 21244293 - 21244345
Alignment:
| Q |
18 |
agtttgattgtgtgattttaggaatatagaagagtgtttgatttaccaacttt |
70 |
Q |
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||||||||||||||||||||||| || ||||||||||||||| |||||||||| |
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| T |
21244293 |
agtttgattgtgtgattttaggactacagaagagtgtttgatctaccaacttt |
21244345 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 71
Target Start/End: Complemental strand, 21213007 - 21212954
Alignment:
| Q |
18 |
agtttgattgtgtgattttaggaatatagaagagtgtttgatttaccaactttt |
71 |
Q |
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|||||||||||||||||||| || |||||||||||| ||||| ||||||||||| |
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| T |
21213007 |
agtttgattgtgtgattttatgactatagaagagtgcttgatctaccaactttt |
21212954 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 18 - 68
Target Start/End: Complemental strand, 21174929 - 21174879
Alignment:
| Q |
18 |
agtttgattgtgtgattttaggaatatagaagagtgtttgatttaccaact |
68 |
Q |
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||||||||||||| ||||||||| |||||||||||| ||||| |||||||| |
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| T |
21174929 |
agtttgattgtgtaattttaggactatagaagagtgcttgatctaccaact |
21174879 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 71
Target Start/End: Complemental strand, 21296056 - 21296003
Alignment:
| Q |
18 |
agtttgattgtgtgattttaggaatatagaagagtgtttgatttaccaactttt |
71 |
Q |
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|||||| |||||||||||||||| |||| ||||||| ||||| ||||||||||| |
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| T |
21296056 |
agtttggttgtgtgattttaggactataaaagagtgcttgatctaccaactttt |
21296003 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 67
Target Start/End: Complemental strand, 21355189 - 21355147
Alignment:
| Q |
25 |
ttgtgtgattttaggaatatagaagagtgtttgatttaccaac |
67 |
Q |
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||||| |||||||||| |||||||||||| ||||||||||||| |
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| T |
21355189 |
ttgtgagattttaggactatagaagagtgcttgatttaccaac |
21355147 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1787 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold1787
Description:
Target: scaffold1787; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 71
Target Start/End: Original strand, 1165 - 1218
Alignment:
| Q |
18 |
agtttgattgtgtgattttaggaatatagaagagtgtttgatttaccaactttt |
71 |
Q |
| |
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|||||||||||||| |||||||| ||||||||||| |||||| ||||||||||| |
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| T |
1165 |
agtttgattgtgtggttttaggactatagaagagtatttgatctaccaactttt |
1218 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0060 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0060
Description:
Target: scaffold0060; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 71
Target Start/End: Original strand, 23158 - 23211
Alignment:
| Q |
18 |
agtttgattgtgtgattttaggaatatagaagagtgtttgatttaccaactttt |
71 |
Q |
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|||||||||||||||||||| || ||||||||| || ||||| ||||||||||| |
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| T |
23158 |
agtttgattgtgtgattttaagactatagaagaatgcttgatctaccaactttt |
23211 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 71
Target Start/End: Original strand, 36223 - 36274
Alignment:
| Q |
18 |
agtttgattgtgtgattttaggaatatagaagagtgtttgatttaccaactttt |
71 |
Q |
| |
|
||||||||| ||||||||||||| ||||| |||||||| |||||||||||||| |
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| T |
36223 |
agtttgattatgtgattttaggattatag--gagtgtttaatttaccaactttt |
36274 |
T |
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