View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17712_low_28 (Length: 239)
Name: NF17712_low_28
Description: NF17712
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17712_low_28 |
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Alignment Details
Target: chr6 (Bit Score: 181; Significance: 6e-98; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 1217207 - 1217440
Alignment:
| Q |
1 |
ttctttttgtagttttttaatctttcaacattatgctggttgaatttttctgactacctttacagttttccagatagtca---------tttgatcgtgg |
91 |
Q |
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| T |
1217207 |
ttctttttgtagttttttaatctttcaacattatgctggttgaatttttctgactacctttacagttttccagatagtcacagagattatttgatcgtgg |
1217306 |
T |
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| Q |
92 |
aaattcgagattccaagggagagaattttggccgtgttattgtccaagtggctaatatatctggtgatggggta----atatttttatgacaatattttt |
187 |
Q |
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| T |
1217307 |
aaattcgagattccaagggagagaattttggccgtgttattgtccaagtggctgatatatctggtgatggggtaatatatatttttatgacaatattttt |
1217406 |
T |
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| Q |
188 |
agggagttattaatgcctgtcatgacgagtggtg |
221 |
Q |
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| T |
1217407 |
agggagttattaatgcctgtcatgacgagtggtg |
1217440 |
T |
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Back To:
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Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 29 - 175
Target Start/End: Original strand, 27745375 - 27745534
Alignment:
| Q |
29 |
cattatgctggttgaattt-ttctgactacc---tttacagttttccagatagtc---------atttgatcgtggaaattcgagattccaagggagaga |
115 |
Q |
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| T |
27745375 |
cattatgctggttgaatatattctgactactacatttacagttttccagatagtcttggagatgatttgctcattgaagttcaagattccaagggaaagc |
27745474 |
T |
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| Q |
116 |
attttggccgtgttattgtccaagtggctaatatatctggtgatggggtaatatttttat |
175 |
Q |
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| T |
27745475 |
attttgggcgtgttcttgtccaagtggctgctatagctgataatccggtaatatttttat |
27745534 |
T |
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