View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17712_low_30 (Length: 235)

Name: NF17712_low_30
Description: NF17712
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17712_low_30
NF17712_low_30
[»] scaffold0282 (1 HSPs)
scaffold0282 (73-206)||(20777-20910)
[»] chr7 (6 HSPs)
chr7 (25-197)||(16092932-16093104)
chr7 (36-197)||(13487459-13487620)
chr7 (147-197)||(9129266-9129316)
chr7 (73-162)||(14974452-14974541)
chr7 (73-162)||(15403928-15404017)
chr7 (111-161)||(5711914-5711964)
[»] chr8 (2 HSPs)
chr8 (13-197)||(23539433-23539615)
chr8 (139-194)||(18822998-18823053)
[»] chr4 (3 HSPs)
chr4 (111-197)||(31934106-31934192)
chr4 (149-197)||(21958285-21958333)
chr4 (139-198)||(18172924-18172983)
[»] chr5 (2 HSPs)
chr5 (13-189)||(20846224-20846400)
chr5 (139-207)||(10178629-10178697)
[»] chr1 (1 HSPs)
chr1 (144-197)||(15806848-15806901)
[»] chr6 (4 HSPs)
chr6 (13-197)||(6777967-6778151)
chr6 (111-206)||(12478119-12478213)
chr6 (25-94)||(12478214-12478283)
chr6 (139-191)||(23293281-23293333)
[»] chr3 (3 HSPs)
chr3 (13-194)||(25487267-25487443)
chr3 (30-191)||(27049887-27050043)
chr3 (147-197)||(8022355-8022405)
[»] scaffold0161 (1 HSPs)
scaffold0161 (15-197)||(4189-4371)
[»] scaffold0186 (1 HSPs)
scaffold0186 (139-194)||(11213-11268)
[»] chr2 (3 HSPs)
chr2 (147-197)||(23157559-23157609)
chr2 (147-197)||(23568816-23568866)
chr2 (147-197)||(22575455-22575505)
[»] scaffold0299 (1 HSPs)
scaffold0299 (21-197)||(10038-10213)
[»] scaffold0333 (1 HSPs)
scaffold0333 (139-194)||(3987-4042)


Alignment Details
Target: scaffold0282 (Bit Score: 62; Significance: 6e-27; HSPs: 1)
Name: scaffold0282
Description:

Target: scaffold0282; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 73 - 206
Target Start/End: Complemental strand, 20910 - 20777
Alignment:
73 ataatcatacatgtaatttcactcattttatataaggtacatatttcacctaatgcatataacccctctaattcacatcaatcatataaagcacataaac 172  Q
    |||| |||||||| ||||| |||||||||| |||| | ||||| ||||||||||||||| ||  | | || ||||||||||||||||  | || ||||||    
20910 ataagcatacatgcaattttactcattttacataaagcacatacttcacctaatgcatacaattcatttagttcacatcaatcatattgatcatataaac 20811  T
173 tcttgcctaatcaactcaacaaatatgaatcatc 206  Q
    |||||||||||||||||||||||||||| |||||    
20810 tcttgcctaatcaactcaacaaatatgattcatc 20777  T

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Target: chr7 (Bit Score: 61; Significance: 3e-26; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 25 - 197
Target Start/End: Original strand, 16092932 - 16093104
Alignment:
25 ttatttagcttaatcaacaaactacacctacttcattattttgaaaacataatcatacatgtaatttcactcattttatataaggtacatatttcaccta 124  Q
    |||||||||||||||| |||||||| |  |  |||| |||| | |||  |||||||||||| || ||||||||||||| |||| | ||||||||||| |     
16092932 ttatttagcttaatcatcaaactacccgaaactcatcatttaggaaatgtaatcatacatgcaacttcactcattttacataaagcacatatttcacatg 16093031  T
125 atgcatataacccctctaattcacatcaatcatataaagcacataaactcttgcctaatcaactcaacaaata 197  Q
    ||||||||||  | ||||||| |||||||||||||| |  ||||||||||||||||| ||||| ||| |||||    
16093032 atgcatataattcatctaatttacatcaatcatatagattacataaactcttgcctagtcaacccaaaaaata 16093104  T

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Target: chr7; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 36 - 197
Target Start/End: Original strand, 13487459 - 13487620
Alignment:
36 aatcaacaaactacacctacttcattattttgaaaacataatcatacatgtaatttcactcattttatataaggtacatatttcacctaatgcatataac 135  Q
    ||||| ||||||||||| ||  ||| |||| ||||| | || |||||||| ||  |||||||||||| ||||   |||||||| || ||||||||||||     
13487459 aatcatcaaactacaccaaccacatcatttagaaaatacaaccatacatgaaacatcactcattttacataaaacacatattttacataatgcatataaa 13487558  T
136 ccctctaattcacatcaatcatataaagcacataaactcttgcctaatcaactcaacaaata 197  Q
     | ||||||||||| |||||||||| | |||||||||||||||||||| ||||||| |||||    
13487559 tcgtctaattcacaacaatcatatagatcacataaactcttgcctaattaactcaataaata 13487620  T

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Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 147 - 197
Target Start/End: Complemental strand, 9129316 - 9129266
Alignment:
147 acatcaatcatataaagcacataaactcttgcctaatcaactcaacaaata 197  Q
    |||||||||||||||| |||||||| |||||||||| ||||||||||||||    
9129316 acatcaatcatataaatcacataaattcttgcctaaccaactcaacaaata 9129266  T

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Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 73 - 162
Target Start/End: Complemental strand, 14974541 - 14974452
Alignment:
73 ataatcatacatgtaatttcactcattttatataaggtacatatttcacctaatgcatataacccctctaattcacatcaatcatataaa 162  Q
    ||||||||||||| ||  | |||||| ||| |||| | |||||||||||||||||||||| |  | |||||||||||||| |||||||||    
14974541 ataatcatacatgcaacattactcatcttacataaagcacatatttcacctaatgcatatgattcatctaattcacatcattcatataaa 14974452  T

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Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 73 - 162
Target Start/End: Complemental strand, 15404017 - 15403928
Alignment:
73 ataatcatacatgtaatttcactcattttatataaggtacatatttcacctaatgcatataacccctctaattcacatcaatcatataaa 162  Q
    ||||||||||||| ||  | |||||| ||| |||| | |||||||||||||||||||||| |  | |||||||||||||| |||||||||    
15404017 ataatcatacatgcaacattactcatcttacataaagcacatatttcacctaatgcatatgattcatctaattcacatcattcatataaa 15403928  T

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Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 111 - 161
Target Start/End: Complemental strand, 5711964 - 5711914
Alignment:
111 acatatttcacctaatgcatataacccctctaattcacatcaatcatataa 161  Q
    ||||||||||| |||||||||||| |  |||||||||||||||||||||||    
5711964 acatatttcacataatgcatataatctatctaattcacatcaatcatataa 5711914  T

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Target: chr8 (Bit Score: 59; Significance: 4e-25; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 13 - 197
Target Start/End: Original strand, 23539433 - 23539615
Alignment:
13 tcacctcgttcattatttagcttaatcaacaaactacacctacttcattattttgaaaacataatcatacatgtaatttcactcat-tttatataaggta 111  Q
    ||||||||||||||||||| |||||||   |||||||||| ||||| | |||| ||||  ||||| ||||||||||||  |||||| |||| |||||  |    
23539433 tcacctcgttcattatttaccttaatctttaaactacaccaacttcgtcatttagaaagtataatgatacatgtaatt--actcatgtttacataagc-a 23539529  T
112 catatttcacctaatgcatataacccctctaattcacatcaatcatataaagcacataaactcttgcctaatcaactcaacaaata 197  Q
    |||  |||||  ||| |||||||  ||||||||||||||||| |||||  | ||||||||||||| ||||||||||||||||||||    
23539530 catgattcacacaattcatataattcctctaattcacatcaaacatatggatcacataaactcttacctaatcaactcaacaaata 23539615  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 139 - 194
Target Start/End: Original strand, 18822998 - 18823053
Alignment:
139 tctaattcacatcaatcatataaagcacataaactcttgcctaatcaactcaacaa 194  Q
    |||||||||||||||||||||||| | ||  ||||||||  |||||||||||||||    
18822998 tctaattcacatcaatcatataaatcgcaccaactcttgtataatcaactcaacaa 18823053  T

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Target: chr4 (Bit Score: 59; Significance: 4e-25; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 111 - 197
Target Start/End: Original strand, 31934106 - 31934192
Alignment:
111 acatatttcacctaatgcatataacccctctaattcacatcaatcatataaagcacataaactcttgcctaatcaactcaacaaata 197  Q
    ||||| ||||||||||||||||||    |||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||    
31934106 acatacttcacctaatgcatataattaatctaattcacatcaatcatataattcacataaactcttgcctaatcaactcaacaaata 31934192  T

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Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 149 - 197
Target Start/End: Original strand, 21958285 - 21958333
Alignment:
149 atcaatcatataaagcacataaactcttgcctaatcaactcaacaaata 197  Q
    |||||||| ||||| ||||||||||||||||||||||||||||||||||    
21958285 atcaatcaaataaatcacataaactcttgcctaatcaactcaacaaata 21958333  T

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Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 139 - 198
Target Start/End: Original strand, 18172924 - 18172983
Alignment:
139 tctaattcacatcaatcatataaagcacataaactcttgcctaatcaactcaacaaatat 198  Q
    |||||||||||||||||||||  | || ||||||||||||||||| ||||||||||||||    
18172924 tctaattcacatcaatcatatggatcatataaactcttgcctaattaactcaacaaatat 18172983  T

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Target: chr5 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 13 - 189
Target Start/End: Complemental strand, 20846400 - 20846224
Alignment:
13 tcacctcgttcattatttagcttaatcaacaaactacacctacttcattattttgaaaacataatcatacatgtaatttcactcat-tttatataaggta 111  Q
    ||||||| |||||| ||||||||||||   |||||||||| ||||| | |||| ||||  ||||||||||||| | |||||||||| |||| |||||  |    
20846400 tcacctcattcattgtttagcttaatctttaaactacaccaacttcgtcatttagaaagtataatcatacatgcagtttcactcatgtttacataagc-a 20846302  T
112 catatttcacctaatgcatataacccctctaattcacatcaatcatataaagcacataaactcttgcctaatcaactc 189  Q
    ||| ||||||  |||| ||||||  ||||||||||||||||| |||||  | ||||| ||||||||||||||||||||    
20846301 catgtttcacacaatgtatataattcctctaattcacatcaaacatatggatcacatgaactcttgcctaatcaactc 20846224  T

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Target: chr5; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 139 - 207
Target Start/End: Complemental strand, 10178697 - 10178629
Alignment:
139 tctaattcacatcaatcatataaagcacataaactcttgcctaatcaactcaacaaatatgaatcatct 207  Q
    ||||||||||| ||||||||||   ||||||||||||||||||||||| ||||||||||||| ||||||    
10178697 tctaattcacaccaatcatatatgtcacataaactcttgcctaatcaagtcaacaaatatgattcatct 10178629  T

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Target: chr1 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 144 - 197
Target Start/End: Complemental strand, 15806901 - 15806848
Alignment:
144 ttcacatcaatcatataaagcacataaactcttgcctaatcaactcaacaaata 197  Q
    ||||||||||||||||||| |||||||||||||| |||||||||||||||||||    
15806901 ttcacatcaatcatataaatcacataaactcttgtctaatcaactcaacaaata 15806848  T

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Target: chr6 (Bit Score: 45; Significance: 9e-17; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 13 - 197
Target Start/End: Original strand, 6777967 - 6778151
Alignment:
13 tcacctcgttcattatttagcttaatcaacaaactacacctacttcattattttgaaaacataatcatacatgtaatttcactcattttatataaggtac 112  Q
    ||||||| |||||||||||||||||||   ||||| || | ||||| | |||| ||||  ||||||||||||| || ||||||||| | | |||| | |     
6777967 tcacctcattcattatttagcttaatctttaaactgcatcaacttcgtcatttagaaagtataatcatacatgcaacttcactcatctcacataaagcat 6778066  T
113 atatttcacctaatgcatataacccctctaattcacatcaatcatataaagcacataaactcttgcctaatcaactcaacaaata 197  Q
    ||| ||||| ||| |||   ||  | ||||||| |||||||||||||  | || ||||||||||||||||| |||||||||||||    
6778067 atacttcacataacgcacgcaattcatctaatttacatcaatcatatggatcatataaactcttgcctaattaactcaacaaata 6778151  T

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Target: chr6; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 111 - 206
Target Start/End: Complemental strand, 12478213 - 12478119
Alignment:
111 acatatttcacctaatgcatataacccctctaattcacatcaatcatataaagcacataaactcttgcctaatcaactcaacaaatatgaatcatc 206  Q
    ||||||||||| |||  ||| |||  | ||||||||||||||| |||||| | ||||| ||||||||||||||||||||||||||||||| |||||    
12478213 acatatttcacataagacatgtaattcatctaattcacatcaagcatatagatcacat-aactcttgcctaatcaactcaacaaatatgattcatc 12478119  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 25 - 94
Target Start/End: Complemental strand, 12478283 - 12478214
Alignment:
25 ttatttagcttaatcaacaaactacacctacttcattattttgaaaacataatcatacatgtaatttcac 94  Q
    |||||||||||||||| ||||||||||| |  ||||| ||| ||||| ||||||||||||| || |||||    
12478283 ttatttagcttaatcatcaaactacaccaaactcattctttagaaaatataatcatacatgcaacttcac 12478214  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 191
Target Start/End: Original strand, 23293281 - 23293333
Alignment:
139 tctaattcacatcaatcatataaagcacataaactcttgcctaatcaactcaa 191  Q
    ||||||||| |||||||||||  | || |||| ||||||||||||||||||||    
23293281 tctaattcatatcaatcatatggatcatataagctcttgcctaatcaactcaa 23293333  T

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Target: chr3 (Bit Score: 44; Significance: 3e-16; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 13 - 194
Target Start/End: Complemental strand, 25487443 - 25487267
Alignment:
13 tcacctcgttcattatttagcttaatcaacaaactacacctacttcattattttgaaaacataatcatacatgtaatttcactcattttatataaggt-a 111  Q
    ||||||| ||| || ||||||||||||| ||||||||| | ||||||| |||| | |||  |||||||| |||      ||||||||||||||||    |    
25487443 tcacctcattccttgtttagcttaatcatcaaactacatcaacttcatcatttaggaaatgtaatcataaatg------cactcattttatataaaaaca 25487350  T
112 catatttcacctaatgcatataacccctctaattcacatcaatcatataaagcacataaactcttgcctaatcaactcaacaa 194  Q
     ||||||||| || ||||||||   | ||||||||||||||||||| || | | ||| |||||||||||||||||||||||||    
25487349 tatatttcacatattgcatatatttcatctaattcacatcaatcatttagatcgcatcaactcttgcctaatcaactcaacaa 25487267  T

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Target: chr3; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 30 - 191
Target Start/End: Original strand, 27049887 - 27050043
Alignment:
30 tagcttaatcaacaaactacacctacttcattattttgaaaacataatcatacatgtaatttcactcattttatataaggtacatatttcacctaatgca 129  Q
    |||||||||||||||  |||||||||||| |||||  ||||| |||||   |||||||| ||||||||| ||| |  | | ||||| |||||  ||||||    
27049887 tagcttaatcaacaat-tacacctacttcgttatta-gaaaatataat---acatgtaacttcactcatcttacaataagcacataattcactcaatgca 27049981  T
130 tataacccctctaattcacatcaatcatataaagcacataaactcttgcctaatcaactcaa 191  Q
    || ||  | ||||||||| |||||||||| ||| ||||||||||||||| ||||||||||||    
27049982 tacaattcatctaattcatatcaatcatacaaatcacataaactcttgcgtaatcaactcaa 27050043  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 147 - 197
Target Start/End: Original strand, 8022355 - 8022405
Alignment:
147 acatcaatcatataaagcacataaactcttgcctaatcaactcaacaaata 197  Q
    ||||||||||| ||||  || ||||||||||||||||||||||||||||||    
8022355 acatcaatcatgtaaattacttaaactcttgcctaatcaactcaacaaata 8022405  T

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Target: scaffold0161 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0161
Description:

Target: scaffold0161; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 15 - 197
Target Start/End: Complemental strand, 4371 - 4189
Alignment:
15 acctcgttcattatttagcttaatcaacaaactacacctacttcattattttgaaaacataatcatacatgtaatttcactcattttatataaggtacat 114  Q
    ||||| |||||||||||||||||||   | |||||||| ||||||| |||| ||||  |||||||| |||| ||||||| ||||||||  ||| |   |     
4371 acctcattcattatttagcttaatctttatactacaccaacttcatcatttagaaagtataatcattcatgcaatttcattcattttacctaaagcgaac 4272  T
115 atttcacctaatgcatataacccctctaattcacatcaatcatataaagcacataaactcttgcctaatcaactcaacaaata 197  Q
    |||  || ||||||| ||||  | |||||||||||||||| ||||||| | ||| ||| | | ||||||||||| ||||||||    
4271 attcgacataatgcacataattcatctaattcacatcaattatataaatcgcatcaacccatacctaatcaacttaacaaata 4189  T

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Target: scaffold0186 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0186
Description:

Target: scaffold0186; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 139 - 194
Target Start/End: Original strand, 11213 - 11268
Alignment:
139 tctaattcacatcaatcatataaagcacataaactcttgcctaatcaactcaacaa 194  Q
    |||||||||||||||||||||  | | |||||||||||||||||||||||||||||    
11213 tctaattcacatcaatcatatggatcgcataaactcttgcctaatcaactcaacaa 11268  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 147 - 197
Target Start/End: Original strand, 23157559 - 23157609
Alignment:
147 acatcaatcatataaagcacataaactcttgcctaatcaactcaacaaata 197  Q
    |||||||||||||||| ||||||||||||||  ||||||||||||||||||    
23157559 acatcaatcatataaatcacataaactcttgtttaatcaactcaacaaata 23157609  T

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Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 147 - 197
Target Start/End: Original strand, 23568816 - 23568866
Alignment:
147 acatcaatcatataaagcacataaactcttgcctaatcaactcaacaaata 197  Q
    |||||||||||||||| ||||||||||||||  ||||||||||||||||||    
23568816 acatcaatcatataaatcacataaactcttgtttaatcaactcaacaaata 23568866  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 147 - 197
Target Start/End: Original strand, 22575455 - 22575505
Alignment:
147 acatcaatcatataaagcacataaactcttgcctaatcaactcaacaaata 197  Q
    |||||||||||||||| ||||||||||||||| ||||| |||||| |||||    
22575455 acatcaatcatataaatcacataaactcttgcttaatcgactcaaaaaata 22575505  T

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Target: scaffold0299 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0299
Description:

Target: scaffold0299; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 197
Target Start/End: Complemental strand, 10213 - 10038
Alignment:
21 ttcattatttagcttaatcaacaaactacacctacttcattattttgaaaacataatcatacatgtaatttcactcattttatataaggtacatatttca 120  Q
    |||||||||||||||||||   |||||||| | ||||| | |||  ||||  ||||||||||||| || ||||||||| | |  ||| | | ||| ||||    
10213 ttcattatttagcttaatctttaaactacatcaacttcgtcatta-gaaagtataatcatacatgcaacttcactcatctcacgtaaagcatatacttca 10115  T
121 cctaatgcatataacccctctaattcacatcaatcatataaagcacataaactcttgcctaatcaactcaacaaata 197  Q
    | ||| |||  |||  | ||||| |||||||||||||||  | || |||||||||| |||||| |||||||||||||    
10114 cataacgcacgtaattcatctaactcacatcaatcatatggatcatataaactctttcctaattaactcaacaaata 10038  T

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Target: scaffold0333 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0333
Description:

Target: scaffold0333; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 139 - 194
Target Start/End: Complemental strand, 4042 - 3987
Alignment:
139 tctaattcacatcaatcatataaagcacataaactcttgcctaatcaactcaacaa 194  Q
    ||||||||||||| |||||||  | ||||||| |||||||||||||||| ||||||    
4042 tctaattcacatcgatcatatgtatcacataagctcttgcctaatcaacccaacaa 3987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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