View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17712_low_35 (Length: 217)

Name: NF17712_low_35
Description: NF17712
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17712_low_35
NF17712_low_35
[»] chr4 (3 HSPs)
chr4 (20-205)||(45733108-45733299)
chr4 (143-205)||(45738578-45738640)
chr4 (57-92)||(23861434-23861470)
[»] chr3 (1 HSPs)
chr3 (35-103)||(27764715-27764783)
[»] chr1 (3 HSPs)
chr1 (36-103)||(44482239-44482305)
chr1 (46-102)||(6427360-6427415)
chr1 (36-102)||(25361896-25361961)
[»] chr5 (3 HSPs)
chr5 (36-102)||(3966513-3966578)
chr5 (42-102)||(22423802-22423861)
chr5 (56-92)||(38866474-38866510)
[»] chr6 (6 HSPs)
chr6 (36-96)||(26562705-26562764)
chr6 (51-102)||(9617444-9617494)
chr6 (48-102)||(9025490-9025543)
chr6 (52-102)||(9629393-9629442)
chr6 (56-102)||(30866148-30866193)
chr6 (52-96)||(7377995-7378038)
[»] chr8 (1 HSPs)
chr8 (57-102)||(31236582-31236626)
[»] chr7 (1 HSPs)
chr7 (48-96)||(22602706-22602753)


Alignment Details
Target: chr4 (Bit Score: 161; Significance: 5e-86; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 20 - 205
Target Start/End: Complemental strand, 45733299 - 45733108
Alignment:
Q  20 tgttggacagacattggtgttcgacactgacacgactccgacacatataaattacattgaatcatgtgattttctcatattatatattattattggtgtc 119  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45733299 tgttggacagacattggtgttcgactctgacacgactccgacacatataaattacattgaatcatgtgattttctcatattatatattattattggtgtc 45733200  T
Q  120 ggcgta------ttcctgtcgtgtccggtcatgtttcatagctttcttctgttttgaatgtgattcttataataatcattgatcacaggttc 205  Q
    ||||||      ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  45733199 ggcgtatctctgttcctgtcgtgtccggtcatgtttcatagctttcttctgttttgaatgtgattcttataataatcattgatcataggttc 45733108  T

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Target: chr4; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 143 - 205
Target Start/End: Complemental strand, 45738640 - 45738578
Alignment:
Q  143 catgtttcatagctttcttctgttttgaatgtgattcttataataatcattgatcacaggttc 205  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||    
T  45738640 catgtttcatagctttcttctgttttgaatgtgattcttataataatcattgttcataggttc 45738578  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 92
Target Start/End: Original strand, 23861434 - 23861470
Alignment:
Q  57 ccgacacatata-aattacattgaatcatgtgatttt 92  Q
    |||||||||||| ||||||||||||||||||||||||    
T  23861434 ccgacacatatataattacattgaatcatgtgatttt 23861470  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 35 - 103
Target Start/End: Complemental strand, 27764783 - 27764715
Alignment:
Q  35 ggtgttcgacactgacacgactccgacacatataaattacattgaatcatgtgattttctcatattata 103  Q
    |||||| |||||||||| ||| ||||| ||||||||||||||||||| || | ||||||||| ||||||    
T  27764783 ggtgttggacactgacatgacaccgacccatataaattacattgaattatataattttctcaaattata 27764715  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 36 - 103
Target Start/End: Complemental strand, 44482305 - 44482239
Alignment:
Q  36 gtgttcgacactgacacgactccgacacatataaattacattgaatcatgtgattttctcatattata 103  Q
    |||| |||||| |||||||| ||||||||||||| ||||| ||||| |||||||||||||| ||||||    
T  44482305 gtgtccgacaccgacacgacaccgacacatataa-ttacactgaattatgtgattttctcaaattata 44482239  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 46 - 102
Target Start/End: Complemental strand, 6427415 - 6427360
Alignment:
Q  46 ctgacacgactccgacacatataaattacattgaatcatgtgattttctcatattat 102  Q
    |||||||||| || |||||||||| ||||||||||| |||||||||||||| |||||    
T  6427415 ctgacacgacaccaacacatataa-ttacattgaattatgtgattttctcaaattat 6427360  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 102
Target Start/End: Complemental strand, 25361961 - 25361896
Alignment:
Q  36 gtgttcgacactgacacgactccgacacatataaattacattgaatcatgtgattttctcatattat 102  Q
    |||| |||||| |||||||| | ||||||||||| ||||| ||||| |||||||||||||| |||||    
T  25361961 gtgtccgacaccgacacgacactgacacatataa-ttacactgaattatgtgattttctcaaattat 25361896  T

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Target: chr5 (Bit Score: 35; Significance: 0.00000000008; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 36 - 102
Target Start/End: Complemental strand, 3966578 - 3966513
Alignment:
Q  36 gtgttcgacactgacacgactccgacacatataaattacattgaatcatgtgattttctcatattat 102  Q
    |||| ||||||||||||||| ||||||||||| ||||||| |||||  ||||||||||||| |||||    
T  3966578 gtgtccgacactgacacgacaccgacacatat-aattacactgaattgtgtgattttctcaaattat 3966513  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 102
Target Start/End: Original strand, 22423802 - 22423861
Alignment:
Q  42 gacactgacacgactccgacacatataaattacattgaatcatgtgattttctcatattat 102  Q
    ||||| |||||||| |||||| |||||| ||| ||||||| |||||||||||||| |||||    
T  22423802 gacaccgacacgacaccgacatatataa-ttatattgaattatgtgattttctcaaattat 22423861  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 92
Target Start/End: Complemental strand, 38866510 - 38866474
Alignment:
Q  56 tccgacacatataaattacattgaatcatgtgatttt 92  Q
    |||||||||||||||||||||||||| |||| |||||    
T  38866510 tccgacacatataaattacattgaattatgtcatttt 38866474  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 36 - 96
Target Start/End: Complemental strand, 26562764 - 26562705
Alignment:
Q  36 gtgttcgacactgacacgactccgacacatataaattacattgaatcatgtgattttctca 96  Q
    ||||||||||| ||||||||  |||||||||| ||||||| ||||| ||||||||||||||    
T  26562764 gtgttcgacaccgacacgacatcgacacatat-aattacactgaattatgtgattttctca 26562705  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 51 - 102
Target Start/End: Complemental strand, 9617494 - 9617444
Alignment:
Q  51 acgactccgacacatataaattacattgaatcatgtgattttctcatattat 102  Q
    ||||| ||||||||||||| ||||||||||| |||||||||||||| |||||    
T  9617494 acgacaccgacacatataa-ttacattgaattatgtgattttctcaaattat 9617444  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 102
Target Start/End: Original strand, 9025490 - 9025543
Alignment:
Q  48 gacacgactccgacacatataaattacattgaatcatgtgattttctcatattat 102  Q
    |||||||| ||||||||||||| ||||| ||||| |||||||||||||| |||||    
T  9025490 gacacgacaccgacacatataa-ttacactgaattatgtgattttctcaaattat 9025543  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 102
Target Start/End: Complemental strand, 9629442 - 9629393
Alignment:
Q  52 cgactccgacacatataaattacattgaatcatgtgattttctcatattat 102  Q
    |||| ||||||||||||| ||||||||||| |||||||||||||| |||||    
T  9629442 cgacaccgacacatataa-ttacattgaattatgtgattttctcaaattat 9629393  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 102
Target Start/End: Original strand, 30866148 - 30866193
Alignment:
Q  56 tccgacacatataaattacattgaatcatgtgattttctcatattat 102  Q
    |||||||||||||| ||||||||||| |||||||||||||| |||||    
T  30866148 tccgacacatataa-ttacattgaattatgtgattttctcaaattat 30866193  T

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Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 96
Target Start/End: Complemental strand, 7378038 - 7377995
Alignment:
Q  52 cgactccgacacatataaattacattgaatcatgtgattttctca 96  Q
    |||| ||||||||||||| ||||||||||| ||||||||||||||    
T  7378038 cgacaccgacacatataa-ttacattgaattatgtgattttctca 7377995  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 57 - 102
Target Start/End: Original strand, 31236582 - 31236626
Alignment:
Q  57 ccgacacatataaattacattgaatcatgtgattttctcatattat 102  Q
    ||||||||||||| ||||||||||| |||||||||||||| |||||    
T  31236582 ccgacacatataa-ttacattgaattatgtgattttctcaaattat 31236626  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 96
Target Start/End: Original strand, 22602706 - 22602753
Alignment:
Q  48 gacacgactccgacacatataaattacattgaatcatgtgattttctca 96  Q
    |||||||| ||||||||||||| ||||| ||||| ||||||||||||||    
T  22602706 gacacgacaccgacacatataa-ttacactgaattatgtgattttctca 22602753  T

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