View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17712_low_4 (Length: 552)
Name: NF17712_low_4
Description: NF17712
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17712_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 438; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 438; E-Value: 0
Query Start/End: Original strand, 13 - 536
Target Start/End: Complemental strand, 52781574 - 52781055
Alignment:
| Q |
13 |
agagacaagaacagaaagtgccaagagaatgagcattagaatatgggaaacagttcctttgacttgttgtgcataatttgtggaagccatagcaagtacg |
112 |
Q |
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| T |
52781574 |
agagacaagaacagaaagtgccaagagaatgagcattagaatatgggaaacagttcctttgacttgttgtgcataatttgtggaagccatagcaagtacg |
52781475 |
T |
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| Q |
113 |
gtaacaggaaaggaataagcccaccatgcaacattaaaccttctcatagatctcttgaatagggctggcctgcaaacctgtttaattcaacataaattaa |
212 |
Q |
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| T |
52781474 |
gtaacaggaaaggaataagcccaccatgcaacattaaaccttctcatagatctcttgaatagggctggcctgcaaacctgtttaattcaacataaattaa |
52781375 |
T |
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| Q |
213 |
atattaatcaatatttcaggcaagaccttgaattttatgtaacttaattgaatatgagannnnnnnngaattctaagcctattctctctttgtagagatt |
312 |
Q |
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| T |
52781374 |
atattaatcaatatttcaggcaagaccttgaattttatgtaacttaattgaatatgagattttttt--aattttaagcctattctctctttgtagagatt |
52781277 |
T |
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| Q |
313 |
aatctttagaatcgagtaaattcaaacttttcaattgtggttaagccttaagccgtaagagattcaaaccatatcattcaaaatactgatgtgttaaaat |
412 |
Q |
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| T |
52781276 |
aatctttagaatcgggtaaattcaaacttattaattgtggttaagccttaagccctaagagactcaaaccatatcattcaaaatactaatgtgttaaaat |
52781177 |
T |
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| Q |
413 |
gactctccattttcacttgtagataacatgacatgacattggagttggacagattgattgtatgaaaaggttttaagaatatgatgcgaaaataatatta |
512 |
Q |
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| T |
52781176 |
gactctccattttcacttgtagataacatgacatgacattggagttggaca----gattgtatgaaaaggttttaagaatatgatgcgaaaataatatta |
52781081 |
T |
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| Q |
513 |
gtcaagtaa--ctgtcaattaataag |
536 |
Q |
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| T |
52781080 |
gtcaagtaattctgtcaattaataag |
52781055 |
T |
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