View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17712_low_5 (Length: 493)
Name: NF17712_low_5
Description: NF17712
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17712_low_5 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 401; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 1 - 493
Target Start/End: Complemental strand, 46838649 - 46838155
Alignment:
| Q |
1 |
gtgtatagaagtttcattttggtttgtttcaacaattatttcaagaaattct--attcaatcgtgcaaaataacttctcaaactcataaaaatagtcctc |
98 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46838649 |
gtgtatagaagtttcattttggtt-gtttcaacaattatttcaagaaattctcaattcaatcgtgcaaaataacttctcaaactcataaaaatagtcctc |
46838551 |
T |
|
| Q |
99 |
catgacgaagtcttcatctttcggttggccaataaccgttccaaactcccttgcatgatcttagagattcagttattcttctcaaactcatgaaaaaagt |
198 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
46838550 |
catgacgaagttttcatctttcggttggccaataaccgttccaaactcccttgcacgatcttagagattcagttatccttctcaaactcatgaaaaaagt |
46838451 |
T |
|
| Q |
199 |
tctactaggggagggattagggattgttgattgtactattacataatcattttcttgaggnnnnnnnntaa-acatcgaagtatacatatcaaatataga |
297 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| || | ||||||||||||||||||||||| || |
|
|
| T |
46838450 |
tctactaggggagggattagttattgttgattgtactatcacataatcattttcttgaggaaaaaaaaaaacaaatcgaagtatacatatcaaatatgga |
46838351 |
T |
|
| Q |
298 |
aatcatgatagctggtaacaatttaatgaaataaactttacatatactcatttgagttttgaatcacattcacagccagaatcatctactactaatctag |
397 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46838350 |
aatcatgatagctggtaacaatttaatgaaataaactttacatatactcatttttgttttgaatcacattcacagccagaatcatctactactaatctag |
46838251 |
T |
|
| Q |
398 |
tatcagcaaacattaaaaggtaccattactctttttctgttttggtaaattctccactggatacttcccaacaaaatgaattaggctgacaggact |
493 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46838250 |
tatcagcaaacattaaaaggtaccattactctttttctgttttggtaaattctccactggatacttcccaacaaaatgaattaggctgacaggact |
46838155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University