View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17712_low_7 (Length: 459)
Name: NF17712_low_7
Description: NF17712
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17712_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 367; Significance: 0; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 18 - 455
Target Start/End: Complemental strand, 4843057 - 4842626
Alignment:
| Q |
18 |
atcaatactatcaaacataaataattaattggtttgatttgtaaatatattttctttcatctaaccaaggcagtatttcctaattactttacgggatggt |
117 |
Q |
| |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4843057 |
atcaatactatcaaacataaataattaattgggttgatttgtaaatatattttctttcatctaaccaaggcagtatttcctaattactttacgggatggt |
4842958 |
T |
|
| Q |
118 |
tttgggatggattgttaccatgaagataccttaacaaaaacaatgaaataagtaaattaatttaggcttaaatattgagtccattggaaaaactttaaga |
217 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
4842957 |
tttgggatggattgttaccatgaagataccttaacaaaaacaatgaaataagtaaattaatttat------atattgagtccattggaaaaactttaaga |
4842864 |
T |
|
| Q |
218 |
tttttatgataatgtcaattttttgaaagatgacaggacatagttaattatgacaggactatgcaatttaaaggatttggtagaactggatatcagctat |
317 |
Q |
| |
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||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||| | |
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| T |
4842863 |
tttttatgataatgttaattttttgaaagatgaccggacatagttaattatgacaggactatgcaatttgaaggatttggaagaactggatatcagcaaa |
4842764 |
T |
|
| Q |
318 |
aacatgtttggtgctaaacttcctgagtgtttaagtaacttaacaaacctcaaaattcttgaccttagccataatctgttcggtggaaattttccatcct |
417 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4842763 |
aacatgtttggggctaaacttcctgagtgtttaagtaacttaacaaacctcagaattcttgaccttagccataatctgttcggtggaaattttccatcct |
4842664 |
T |
|
| Q |
418 |
tcactagcaatctcacatccttgacattcttctcactc |
455 |
Q |
| |
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|||||| |||||||||||||||||||||||| |||||| |
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| T |
4842663 |
tcactaccaatctcacatccttgacattcttatcactc |
4842626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 189 - 455
Target Start/End: Original strand, 5172633 - 5172899
Alignment:
| Q |
189 |
atattgagtccattggaaaaactttaagatttttatgataatgtcaattttttgaaagatgacaggacatagttaattatgacaggactatgcaatttaa |
288 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| || |||||||||||||||||||||||||||||||||| | |
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|
| T |
5172633 |
atattgagtccattggaaaaactttaagatttttatgataatgtcaatttttgtaaagataactggacatagttaattatgacaggactatgcaatttga |
5172732 |
T |
|
| Q |
289 |
aggatttggtagaactggatatcagctataacatgtttggtgctaaacttcctgagtgtttaagtaacttaacaaacctcaaaattcttgaccttagcca |
388 |
Q |
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|||||||||||||||||||||||||| | ||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
5172733 |
aggatttggtagaactggatatcagcaaaaacatgtttggggctaaacttcctgagtgtttaagtaacttaacaaacctcagaattcttgaccttagcca |
5172832 |
T |
|
| Q |
389 |
taatctgttcggtggaaattttccatccttcactagcaatctcacatccttgacattcttctcactc |
455 |
Q |
| |
|
|||||| ||| ||||||||||||||||||||| ||| ||||||||||||||||||||||| |||||| |
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|
| T |
5172833 |
taatctattcagtggaaattttccatccttcattagtaatctcacatccttgacattcttatcactc |
5172899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 148 - 436
Target Start/End: Original strand, 5195323 - 5195606
Alignment:
| Q |
148 |
ttaacaaaaacaatgaaataagtaaattaatttaggcttaaatattgagtccattggaaaaacttt-aagatttttatgataatgtcaattttttgaaag |
246 |
Q |
| |
|
||||||||||||| ||||||||| ||||||| || ||||||| |||||||||||||||| ||||||||||||||||||||||||||| |||| |
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| T |
5195323 |
ttaacaaaaacaacgaaataagttaattaatgtat------atattgacgccattggaaaaacttttaagatttttatgataatgtcaatttttgtaaag |
5195416 |
T |
|
| Q |
247 |
atgacaggacatagttaattatgacaggactatgcaatttaaaggatttggtagaactggatatcagctataacatgtttggtgctaaacttcctgagtg |
346 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| | ||||||||| ||||||||||||| || || |
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| T |
5195417 |
atgacaggacatagttaattatgacaggactatgcaattttaaggatttggtagaactggatatcagcaaaaacatgtttagtgctaaacttccagattg |
5195516 |
T |
|
| Q |
347 |
tttaagtaacttaacaaacctcaaaattcttgaccttagccataatctgttcggtggaaattttccatccttcactagcaatctcacatc |
436 |
Q |
| |
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|||||| |||||||||||||||| | ||||||| ||||| ||||||||||| |||||||||||||||| |||| ||||||||||||||| |
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|
| T |
5195517 |
tttaagcaacttaacaaacctcagagttcttgaacttagtaataatctgttcagtggaaattttccatctttcattagcaatctcacatc |
5195606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 148 - 436
Target Start/End: Original strand, 5159678 - 5159964
Alignment:
| Q |
148 |
ttaacaaaaacaatgaaataagtaaattaatttaggcttaaatattgagtccattggaaaaactttaagatttttatgataatgtcaattttttgaaaga |
247 |
Q |
| |
|
||||||||||||||||||||||| ||||||| || ||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
5159678 |
ttaacaaaaacaatgaaataagttaattaatgtat------atattgacgccattggaaaaactttaagatttttatgataatgtcaatttttgtaaaga |
5159771 |
T |
|
| Q |
248 |
tgacaggacatagttaa----ttatgacaggactatgcaatttaaaggatttggtagaactggatatcagctataacatgtttggtgctaaacttcctga |
343 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||| | ||||||||| |||||||| ||||||| |
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|
| T |
5159772 |
tgacaggacatagttaattaattatgacaggactatgcaatttgaaggatttggtagaactggatatcagccagaacatgtttagtgctaaatttcctga |
5159871 |
T |
|
| Q |
344 |
gtgtttaagtaacttaacaaacctcaaaattcttgaccttagccataatctgttcggtggaaattttccatccttcactagcaatctcacatc |
436 |
Q |
| |
|
||||||||| |||||||||||||||| | ||||||| ||||| ||||||||||| ||||||| |||||||| |||| ||||||||||||||| |
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| T |
5159872 |
gtgtttaagcaacttaacaaacctcagagttcttgaacttagtaataatctgttcagtggaaagtttccatctttcattagcaatctcacatc |
5159964 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 148 - 436
Target Start/End: Original strand, 5181925 - 5182212
Alignment:
| Q |
148 |
ttaacaaaaacaatgaaataagtaaattaatttaggcttaaatattgagtccattggaaaaacttt-aagatttttatgataatgtcaattttttgaaag |
246 |
Q |
| |
|
|||||||||| |||||||||||| ||||||| || ||||||| |||||||||||||||| ||||||||||||||||||||||||||| | || |
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| T |
5181925 |
ttaacaaaaagaatgaaataagttaattaatgtat------atattgacgccattggaaaaacttttaagatttttatgataatgtcaatttttgtatag |
5182018 |
T |
|
| Q |
247 |
atgacaggacatagttaa----ttatgacaggactatgcaatttaaaggatttggtagaactggatatcagctataacatgtttggtgctaaacttcctg |
342 |
Q |
| |
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|||||||||||||||||| |||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||| ||||||||||||| | |
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|
| T |
5182019 |
atgacaggacatagttaattaattatgacaggactatgcaatttgaaggatttggtagaattggatatcagctataacatgtttagtgctaaacttccag |
5182118 |
T |
|
| Q |
343 |
agtgtttaagtaacttaacaaacctcaaaattcttgaccttagccataatctgttcggtggaaattttccatccttcactagcaatctcacatc |
436 |
Q |
| |
|
|||||||||| |||||||||||||| | | ||||||| ||||| ||||||||||| |||||||||||||||| |||| ||||||||||||||| |
|
|
| T |
5182119 |
agtgtttaagcaacttaacaaaccttagagttcttgaacttagtaataatctgttcagtggaaattttccatctttcattagcaatctcacatc |
5182212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 266 - 436
Target Start/End: Original strand, 5213602 - 5213772
Alignment:
| Q |
266 |
tatgacaggactatgcaatttaaaggatttggtagaactggatatcagctataacatgtttggtgctaaacttcctgagtgtttaagtaacttaacaaac |
365 |
Q |
| |
|
|||||||||||||||||| || |||||||||||||| || ||||||||||||||||||||| | || ||||||| ||||||||||| |||||||||||| |
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|
| T |
5213602 |
tatgacaggactatgcaaattgaaggatttggtagagctagatatcagctataacatgtttagcgcgcaacttcccgagtgtttaagcaacttaacaaac |
5213701 |
T |
|
| Q |
366 |
ctcaaaattcttgaccttagccataatctgttcggtggaaattttccatccttcactagcaatctcacatc |
436 |
Q |
| |
|
|| || ||||||| |||||| ||||| ||||| ||||||||||||||||||||| ||| ||||||||||| |
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|
| T |
5213702 |
ctgaatgttcttgaacttagctataatttgttcagtggaaattttccatccttcattagtaatctcacatc |
5213772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 18 - 63
Target Start/End: Original strand, 5172565 - 5172610
Alignment:
| Q |
18 |
atcaatactatcaaacataaataattaattggtttgatttgtaaat |
63 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5172565 |
atcaatactatcaaacataaataattaattggtttgatttgtaaat |
5172610 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 403 - 436
Target Start/End: Complemental strand, 4857151 - 4857118
Alignment:
| Q |
403 |
gaaattttccatccttcactagcaatctcacatc |
436 |
Q |
| |
|
||||||||||||||||||||| |||||||||||| |
|
|
| T |
4857151 |
gaaattttccatccttcactaccaatctcacatc |
4857118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 98 - 145
Target Start/End: Original strand, 5181846 - 5181894
Alignment:
| Q |
98 |
taattactttacgggatggttttggg-atggattgttaccatgaagata |
145 |
Q |
| |
|
||||| ||| |||||||||||||||| |||||||||||| ||||||||| |
|
|
| T |
5181846 |
taattgcttcacgggatggttttggggatggattgttacaatgaagata |
5181894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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