View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17712_low_8 (Length: 447)
Name: NF17712_low_8
Description: NF17712
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17712_low_8 |
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| [»] scaffold0537 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 189 - 428
Target Start/End: Complemental strand, 26137541 - 26137303
Alignment:
| Q |
189 |
gaatccacactttactcgatctttcccacttcaaccagttctaaatcaatgaccttgagagatttgatccaatttggggtgcaaatcaaagcttcaacag |
288 |
Q |
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| T |
26137541 |
gaatccacactttactcgatctttcccacttcaaccagttctaaatcaatgaccttgagagatttgatccaatttggggtgcaa-tcaaagcttcaacag |
26137443 |
T |
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| Q |
289 |
tagagatttaattaactaccaaacgagtaaaggactcaacctccagtactaaacgttgactagacagatacgttggatacaataataaccaatatatctc |
388 |
Q |
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| T |
26137442 |
tagagatttaattaactaccaaacgagtaaaggactcgacctccagtactaaacgttgacgagacagatacgttggatacaataataaccaatatatctc |
26137343 |
T |
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| Q |
389 |
aatctacgcggtaaacaatatgatatttgtttgtgtaaat |
428 |
Q |
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| T |
26137342 |
aatctacgcggtaaacagtatgatatttgtttgtgtaaat |
26137303 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 1 - 121
Target Start/End: Complemental strand, 26137727 - 26137609
Alignment:
| Q |
1 |
gcaaaaggcagtagcgaatccaatcctaacactaccaaacataataagattaaaaatttaaataaacacaacaacgatacgacagcaacacaaagaaata |
100 |
Q |
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| T |
26137727 |
gcaaaaggcagtagcgaatccaatcctaacactaccaaacataataagattaaaaatttaaataagcacaacgacg--acgacagcaacacaaagaaata |
26137630 |
T |
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| Q |
101 |
aatacaacactcacaaatacc |
121 |
Q |
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| T |
26137629 |
aatacaacactcacaaatacc |
26137609 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 78; Significance: 4e-36; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 228 - 421
Target Start/End: Original strand, 27708481 - 27708676
Alignment:
| Q |
228 |
tctaaatcaatgaccttgagagatttgatccaatttggggtgcaaatcaaagcttcaacagtaga--gatttaattaactaccaaacgagtaaaggactc |
325 |
Q |
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| T |
27708481 |
tctaaatcaatgaccttgggagatttgatccaattttgggtgcagatcaaagcttcaacagtagagggatttaatgaactgcgaaacgagtcaaggactc |
27708580 |
T |
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| Q |
326 |
aacctccagtactaaacgttgact-agacagatacgttggatacaataataaccaatatatctcaatctacgcggtaaacaatatgatatttgtttg |
421 |
Q |
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| T |
27708581 |
gacctccagtactaaaagctgactcaga-agatacggtggatacaggaatagacaatatatctcgtgctatgcgggaaagaacatgatatttatttg |
27708676 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0537 (Bit Score: 74; Significance: 9e-34; HSPs: 1)
Name: scaffold0537
Description:
Target: scaffold0537; HSP #1
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 228 - 421
Target Start/End: Complemental strand, 10326 - 10131
Alignment:
| Q |
228 |
tctaaatcaatgaccttgagagatttgatccaatttggggtgcaaatcaaagcttcaacagtaga--gatttaattaactaccaaacgagtaaaggactc |
325 |
Q |
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| T |
10326 |
tctaaatcaatgaccttggtagatttggtccaattttgggtgcagatcaaagcttcaacagtagagggatttaatgaactacgaaacgagtcaaagactc |
10227 |
T |
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| Q |
326 |
aacctccagtactaaacgttgact-agacagatacgttggatacaataataaccaatatatctcaatctacgcggtaaacaatatgatatttgtttg |
421 |
Q |
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| T |
10226 |
gacctccagtactaaaagctgactcaga-agatacggtggatacaggaataaacaatatatctcgtgctatgcggaaaagaacatgatatttatttg |
10131 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 73; Significance: 3e-33; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 228 - 388
Target Start/End: Original strand, 17384818 - 17384980
Alignment:
| Q |
228 |
tctaaatcaatgaccttgagagatttgatccaatttggggtgcaaatcaaagcttcaacagtaga--gatttaattaactaccaaacgagtaaaggactc |
325 |
Q |
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|||||||||||||||||| ||||||||||||||||| ||||||| ||||||||||||||| |||| |||||||| |||| | |||||||| |||||||| |
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| T |
17384818 |
tctaaatcaatgaccttgggagatttgatccaattttgggtgcagatcaaagcttcaacaatagagggatttaatgaactgcgaaacgagtcaaggactc |
17384917 |
T |
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| Q |
326 |
aacctccagtactaaacgttgact-agacagatacgttggatacaataataaccaatatatctc |
388 |
Q |
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| T |
17384918 |
gacctccagtactaaaagctgactcaga-agatacggtggatacaggaatagacaatatatctc |
17384980 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 228 - 341
Target Start/End: Complemental strand, 5885465 - 5885350
Alignment:
| Q |
228 |
tctaaatcaatgaccttgagagatttgatccaatttggggtgcaaatcaaagcttcaacagtaga--gatttaattaactaccaaacgagtaaaggactc |
325 |
Q |
| |
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|||||||||||||| ||| |||||||||| |||||| ||||||| ||||||| || ||||||||| |||||||| |||| | ||||| || |||||||| |
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| T |
5885465 |
tctaaatcaatgacattgggagatttgattcaattttgggtgcagatcaaagttttaacagtagagggatttaatgaactgcgaaacgtgtcaaggactc |
5885366 |
T |
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| Q |
326 |
aacctccagtactaaa |
341 |
Q |
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| T |
5885365 |
gacctccagtactaaa |
5885350 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 228 - 293
Target Start/End: Original strand, 51511257 - 51511322
Alignment:
| Q |
228 |
tctaaatcaatgaccttgagagatttgatccaatttggggtgcaaatcaaagcttcaacagtagag |
293 |
Q |
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| T |
51511257 |
tctaaatcaatgaccttgggagatttgatccaattttgggtgcagatcaaagcttcaacaatagag |
51511322 |
T |
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