View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17713_high_14 (Length: 215)
Name: NF17713_high_14
Description: NF17713
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17713_high_14 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 39418311 - 39418097
Alignment:
| Q |
1 |
ttgaccaaatcacattctgttgtgcgttgtggtggtaccatagtaacaccaaagagactcagaaccttagccaagaaacaggtacaaaaatacctaatga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39418311 |
ttgaccaaatcacattctgttgtgcgttgtggtggtaccatagtaacaccaaagagactcagaaccttagccaagaaacaggtacaaaaatacctaatga |
39418212 |
T |
|
| Q |
101 |
aatttatttgatttaagtatatcattttgattaacttttgttggtattttttgttaggtggattatttgctaggggacaacccattgaagatgtcataca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39418211 |
aatttatttgatttaagtatatcattttgattaacttttgttggtattttttgttaggtggattatttgctaggggacaacccattgaagatgtcataca |
39418112 |
T |
|
| Q |
201 |
tggtggggtatggac |
215 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
39418111 |
tggtggggtatggac |
39418097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 155 - 209
Target Start/End: Original strand, 44513327 - 44513381
Alignment:
| Q |
155 |
taggtggattatttgctaggggacaacccattgaagatgtcatacatggtggggt |
209 |
Q |
| |
|
||||| ||||| ||| | || |||||||||||||||||||||||||||||||||| |
|
|
| T |
44513327 |
taggttgattacttgttgggagacaacccattgaagatgtcatacatggtggggt |
44513381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University