View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17713_low_1 (Length: 586)
Name: NF17713_low_1
Description: NF17713
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17713_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 533; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 533; E-Value: 0
Query Start/End: Original strand, 11 - 571
Target Start/End: Original strand, 39417539 - 39418099
Alignment:
| Q |
11 |
cacagataacaagcaaaactaaattaaacacttttgcattgaacttttaacttctcgataattttaacatcacttgataatttccccaatcatacatagt |
110 |
Q |
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| T |
39417539 |
cacaaataacaagcaaaactaaattaaacacttttgcattgaacttttaacttctcgataattttaacatcacttgataatttccccaatcatacatagt |
39417638 |
T |
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| Q |
111 |
ttaacatttaacataaatatagaagcattgccacaatgaaaactactcaatgtgacaagtttttaaaagcttctaagaaatgtagtaaccaattaaaagt |
210 |
Q |
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| T |
39417639 |
ttaacatttaacataaatatagaagcattgccacaatgaaaactactcaatgtgacaagtttttaaaagcttctaagaaatgtagtaaccaattaaaagt |
39417738 |
T |
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| Q |
211 |
actagtactaaacaaattagagaaaatataaaaactaaaacatcataatcagattcatccaaacaagttggagatgctggtttctaaagttgaccaaatg |
310 |
Q |
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| T |
39417739 |
actagtactaaccaaattagagaaaatataaaaactaaaacatcataatcagattcatccaaacaagttggagatgctggtttctaaagttgaccaaatg |
39417838 |
T |
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| Q |
311 |
agtgtgcaagataagcaagtgtccctacaagtggtgcattaacataagttgctggctctgattgctcataatctgaccgtttatctggaaacctatcatg |
410 |
Q |
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| T |
39417839 |
agtgtgcaagataagcaagtgtccctacaagtggtgcattaacataagttgctggctctgattgctcataatctgaccgtttatctggaaacctatcatg |
39417938 |
T |
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| Q |
411 |
ctgatctggtcctccgacaacagcacccactagaatgttgggattaggagattgtgaactcatcacactgaaacctgctgaacactggatctttcctcgg |
510 |
Q |
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| T |
39417939 |
ctgatctggtcctccgacaacagcacccactagaatgttgggattaggagattgtgaactcatcacactgaaacctgctgaacactggatctttcctggg |
39418038 |
T |
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| Q |
511 |
tgtacagccgttgtaggaagagatgatcctctgagttgtatcctttgtggataccttggtc |
571 |
Q |
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| T |
39418039 |
tgtacagccattgaaggaagagatgatcctctgtggtgtatcctttgtggataccttggtc |
39418099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 91; Significance: 8e-44; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 298 - 568
Target Start/End: Complemental strand, 44513658 - 44513388
Alignment:
| Q |
298 |
agttgaccaaatgagtgtgcaagataagcaagtgtccctacaagtggtgcattaacataagttgctggctctgattgctcataatctgaccgtttatctg |
397 |
Q |
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| T |
44513658 |
agttgtccaaatgaatgtgcaagataagccaatgctcctacaagaggtgcattgatgtaagtagctggctctgattgctcataatctgaacgttcatctg |
44513559 |
T |
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| Q |
398 |
gaaacctatcatgctgatctggtcctccgacaacagcacccactagaatgttgggattaggagattgtgaactcatcacactgaaacctgctgaacactg |
497 |
Q |
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| T |
44513558 |
gaaagctatcatgcaaatcaggtcccccaacaactgtacccactagaatgttggggttaggggattgtgagtccattacactgaatccttctgaacattg |
44513459 |
T |
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| Q |
498 |
gatctttcctcggtgtacagccgttgtaggaagagatgatcctctgagttgtatcctttgtggataccttg |
568 |
Q |
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| T |
44513458 |
gatcttgccagggtgaacagcaatagatggaagtgatgatcccctatggtgtatcctttgtgggtaccttg |
44513388 |
T |
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