View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17713_low_11 (Length: 245)
Name: NF17713_low_11
Description: NF17713
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17713_low_11 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 29 - 245
Target Start/End: Complemental strand, 36718193 - 36717974
Alignment:
| Q |
29 |
tgctgatttgtggattactttgcgaatatgatacaggattcattgaaacaataataatgagacaaagagagtttcaatagaataccttgacttatcaaaa |
128 |
Q |
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| T |
36718193 |
tgctgattagtggattactttgcgaatatgatacaggattcattgaaacaataataatgagacaaagagagtttcaatagaataccttgacttatcaaaa |
36718094 |
T |
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| Q |
129 |
taagagagttacaatgaaaatatagc---cttatctaaaaggaaataatgatatatagcattgttattctcattgcctgtcttaaaaagtgagatatttg |
225 |
Q |
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| T |
36718093 |
taagagagttacaatgaaaatatagcattcttatctaaaaggaaataatgatatatagcattgttattctcattgcctgtcttaaaaagtgagatatttg |
36717994 |
T |
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| Q |
226 |
gaagttgaaccaattccacc |
245 |
Q |
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| T |
36717993 |
gaagttgaaccaattccacc |
36717974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 66; Significance: 3e-29; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 19 - 242
Target Start/End: Original strand, 2040524 - 2040764
Alignment:
| Q |
19 |
ttatagttcttgctgatttgtggattactttgcgaatatgatacaggattcattgaaacaataataatgagacaaagagagtttca--atagaatacctt |
116 |
Q |
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| T |
2040524 |
ttatagttcttgctgatttgtggattacttttggaacatgataaaggattcattgaaacaataataaggagacaa--agagtttcaatatagaatac--- |
2040618 |
T |
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| Q |
117 |
gacttatcaaaataagag-----agttacaatgaaaata-tagccttatctaaaaggaaataatgatatatagcattgttattctcattgcctg------ |
204 |
Q |
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| T |
2040619 |
-acttatcaaagtaagagttacaacttacaatgaaactagcattgttatctaaaagcaaataatgatacatagcattgttatcttcattgcctgacccta |
2040717 |
T |
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| Q |
205 |
---------tcttaaaaagtgagatatttggaagttgaaccaattcc |
242 |
Q |
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| T |
2040718 |
aaatttcgttcttaaaaagtgagatatttggaagttgaaccaattcc |
2040764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 205 - 242
Target Start/End: Complemental strand, 1352917 - 1352880
Alignment:
| Q |
205 |
tcttaaaaagtgagatatttggaagttgaaccaattcc |
242 |
Q |
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| T |
1352917 |
tcttaaaaagtgagatatttggaagttgaaccaattcc |
1352880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 97 - 204
Target Start/End: Complemental strand, 1358092 - 1357992
Alignment:
| Q |
97 |
gagtttcaatagaataccttgacttatcaaaataagagagttacaatgaaaatatagccttatctaaaaggaaataatgatatatagcattgttattctc |
196 |
Q |
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| T |
1358092 |
gagtttcaatagaataccatgacttatcaaaata--agagttaccgtgaaaatata-----cggtaaaatcaaataatgatacatagcattgttatcctc |
1358000 |
T |
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| Q |
197 |
attgcctg |
204 |
Q |
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| T |
1357999 |
attgcctg |
1357992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 204
Target Start/End: Complemental strand, 1352969 - 1352933
Alignment:
| Q |
168 |
aaataatgatatatagcattgttattctcattgcctg |
204 |
Q |
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| T |
1352969 |
aaataatgatacatagcattgttatcctcattgcctg |
1352933 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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