View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17713_low_2 (Length: 483)
Name: NF17713_low_2
Description: NF17713
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17713_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 384; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 21 - 468
Target Start/End: Complemental strand, 39801338 - 39800894
Alignment:
| Q |
21 |
atacatagtcataactcataaggtctttccataattaagagtatatttatttttactatttggtcaaacttgttttttgagtnnnnnnntaaaggaatga |
120 |
Q |
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| T |
39801338 |
atacatagtcataactcataagttctttccataattaagagtatatttatttttactatttggtcaaacttgttttttgagtaaaaaaataaaggaatga |
39801239 |
T |
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| Q |
121 |
gactaaaaagacaatgagaatggaaagcgttaataatcgagattcaaatgatgaccactgagtgtgtttcaaatatgtattgtaactgagacaactacca |
220 |
Q |
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| T |
39801238 |
gactaaaaagacaatgagaatggaaagcgttaataatcgagattcatatgatgaccactgagtgtgtttcaaatatgtattgtaactga--caactacca |
39801141 |
T |
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| Q |
221 |
atacaataggacacaaaaagagaggcagaatcctcactgtgtcttatgtaaccacatcctaggtacgtaatatatagaagaagacatgtatgtagtagta |
320 |
Q |
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| T |
39801140 |
atacaataggacacaaaaagagaggcagaatcctcactgtgtcttatgtaaccacatcctaggtacgtaatatatagaagaagacatgtatgtagtagta |
39801041 |
T |
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| Q |
321 |
tatgcttgagattgttgtgtctttcttttcacgaaagttatggtttgtgaagtggaggaatcctcctcctctgctgaatccagcttccgcgaactcgacg |
420 |
Q |
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| T |
39801040 |
tatgcttgagattattgtgtctttcttttcac-atagttatggtttgtgaagtggaggaatcctcctcctctgctgaatccagcttccgtgaactcgacg |
39800942 |
T |
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| Q |
421 |
atgcattcttgcaggttagttaatcaatcatcactcccatctcttcat |
468 |
Q |
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| T |
39800941 |
atgcattcttgcaggttagttaatcaatcatcactctcatctcttcat |
39800894 |
T |
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