View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17713_low_3 (Length: 414)

Name: NF17713_low_3
Description: NF17713
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17713_low_3
NF17713_low_3
[»] chr6 (2 HSPs)
chr6 (183-298)||(17247791-17247906)
chr6 (345-414)||(25167810-25167879)
[»] chr3 (4 HSPs)
chr3 (295-414)||(16892994-16893113)
chr3 (321-412)||(26796906-26796997)
chr3 (334-410)||(51524823-51524899)
chr3 (347-410)||(31067144-31067207)
[»] chr1 (6 HSPs)
chr1 (295-414)||(50903566-50903685)
chr1 (295-410)||(49491967-49492082)
chr1 (302-414)||(19394211-19394323)
chr1 (301-414)||(17114798-17114911)
chr1 (349-410)||(13062050-13062111)
chr1 (335-402)||(41035121-41035188)
[»] chr7 (1 HSPs)
chr7 (295-414)||(26449620-26449737)
[»] chr4 (6 HSPs)
chr4 (295-376)||(12579947-12580028)
chr4 (301-410)||(19852407-19852516)
chr4 (345-414)||(37049967-37050036)
chr4 (301-410)||(16593857-16593966)
chr4 (335-414)||(16832224-16832303)
chr4 (335-376)||(24239962-24240003)
[»] chr2 (5 HSPs)
chr2 (339-414)||(14296342-14296417)
chr2 (334-413)||(18811790-18811869)
chr2 (380-414)||(8413901-8413935)
chr2 (349-407)||(13502653-13502711)
chr2 (345-411)||(37344586-37344652)
[»] chr8 (4 HSPs)
chr8 (301-410)||(8831310-8831419)
chr8 (302-410)||(399808-399916)
chr8 (335-414)||(27786871-27786950)
chr8 (335-414)||(36206504-36206583)
[»] chr5 (2 HSPs)
chr5 (335-408)||(37307257-37307330)
chr5 (345-414)||(788359-788428)
[»] scaffold0531 (1 HSPs)
scaffold0531 (347-410)||(10228-10291)


Alignment Details
Target: chr6 (Bit Score: 104; Significance: 1e-51; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 183 - 298
Target Start/End: Complemental strand, 17247906 - 17247791
Alignment:
Q  183 aaatccagaagaccaactaccttagctgctttctcatggtttcttgggtggtggtctttctctctggattaggttgcttcgccaccgtgctctattttct 282  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||  ||||||||||||||||||    
T  17247906 aaatccagaagaccaactaccttagctgctttctcatggtttcttgggtggtggtctttctctctggattatgttgcttcttcaccgtgctctattttct 17247807  T
Q  283 tttctcttcattagtt 298  Q
    ||||||||||||||||    
T  17247806 tttctcttcattagtt 17247791  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 345 - 414
Target Start/End: Original strand, 25167810 - 25167879
Alignment:
Q  345 actatccaagtctgtcagagagaactaaggcagataaaaagcagaagaagcaggtgaacaaagtgaagcc 414  Q
    ||||||||||||| || || || ||||||||||| | |||| ||||||| || |||||||||||||||||    
T  25167810 actatccaagtctatctgaaagcactaaggcagagagaaagaagaagaaacatgtgaacaaagtgaagcc 25167879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 104; Significance: 1e-51; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 295 - 414
Target Start/End: Original strand, 16892994 - 16893113
Alignment:
Q  295 agttgaggaagaggacagtgatgaagccatcacatcaacttttgagcagcactatccaagtctgtcagagagaactaaggcagataaaaagcagaagaag 394  Q
    ||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||    
T  16892994 agttgaggaagaggacaatgatgaagccatcacatcaacctttgagcagcactatccaagtctgtcagagagcactaaggcagataaaaagcaaaagaag 16893093  T
Q  395 caggtgaacaaagtgaagcc 414  Q
    ||||||||||||||||||||    
T  16893094 caggtgaacaaagtgaagcc 16893113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 321 - 412
Target Start/End: Complemental strand, 26796997 - 26796906
Alignment:
Q  321 ccatcacatcaacttttgagcagcactatccaagtctgtcagagagaactaaggcagataaaaagcagaagaagcaggtgaacaaagtgaag 412  Q
    |||||| ||||  ||||||||||||| |||| ||||| || ||||| ||||||||||| | |||| |||||||||| || ||||||||||||    
T  26796997 ccatcatatcagattttgagcagcaccatccgagtctatctgagagcactaaggcagagagaaagaagaagaagcatgttaacaaagtgaag 26796906  T

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Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 334 - 410
Target Start/End: Original strand, 51524823 - 51524899
Alignment:
Q  334 ttttgagcagcactatccaagtctgtcagagagaactaaggcagataaaaagcagaagaagcaggtgaacaaagtga 410  Q
    |||||||||||||||||||||||| || ||||| | |||||| || | |||| |||||||||||||| | |||||||    
T  51524823 ttttgagcagcactatccaagtctatctgagagcaataaggctgagagaaagaagaagaagcaggtgcataaagtga 51524899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 347 - 410
Target Start/End: Original strand, 31067144 - 31067207
Alignment:
Q  347 tatccaagtctgtcagagagaactaaggcagataaaaagcagaagaagcaggtgaacaaagtga 410  Q
    ||||||||||| || ||||| ||||||||||| |||||| |||||||||| ||| |||||||||    
T  31067144 tatccaagtctatcggagagcactaaggcagagaaaaagaagaagaagcatgtgcacaaagtga 31067207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 80; Significance: 2e-37; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 295 - 414
Target Start/End: Complemental strand, 50903685 - 50903566
Alignment:
Q  295 agttgaggaagaggacagtgatgaagccatcacatcaacttttgagcagcactatccaagtctgtcagagagaactaaggcagataaaaagcagaagaag 394  Q
    ||||||||||||||||| ||||||||||||| ||||||  ||| |||| ||||||||||||||||||||||| |||||||||||   |||||||||||||    
T  50903685 agttgaggaagaggacaatgatgaagccatcccatcaatatttcagcaacactatccaagtctgtcagagagcactaaggcagagtgaaagcagaagaag 50903586  T
Q  395 caggtgaacaaagtgaagcc 414  Q
    ||||||||||||||||||||    
T  50903585 caggtgaacaaagtgaagcc 50903566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 295 - 410
Target Start/End: Complemental strand, 49492082 - 49491967
Alignment:
Q  295 agttgaggaagaggacagtgatgaagccatcacatcaacttttgagcagcactatccaagtctgtcagagagaactaaggcagataaaaagcagaagaag 394  Q
    |||| |||||||||||| |||| |||||||||||||||  || ||||| |||||||||||||||| |||||| ||||||||||  | |||||||||||||    
T  49492082 agttaaggaagaggacaatgataaagccatcacatcaatcttcgagcaacactatccaagtctgttagagagcactaaggcagggagaaagcagaagaag 49491983  T
Q  395 caggtgaacaaagtga 410  Q
    || |||||||||||||    
T  49491982 catgtgaacaaagtga 49491967  T

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Target: chr1; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 302 - 414
Target Start/End: Complemental strand, 19394323 - 19394211
Alignment:
Q  302 gaagaggacagtgatgaagccatcacatcaacttttgagcagcactatccaagtctgtcagagagaactaaggcagataaaaagcagaagaagcaggtga 401  Q
    ||||||||||  |||||||||||   ||||   |||||||||||||||||||| || || ||||| ||||| ||||| |||||| |||||||||| ||||    
T  19394323 gaagaggacaacgatgaagccattgtatcagactttgagcagcactatccaagcctatcggagagcactaaagcagagaaaaagaagaagaagcatgtga 19394224  T
Q  402 acaaagtgaagcc 414  Q
     ||||||||||||    
T  19394223 gcaaagtgaagcc 19394211  T

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Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 301 - 414
Target Start/End: Complemental strand, 17114911 - 17114798
Alignment:
Q  301 ggaagaggacagtgatgaagccatcacatcaacttttgagcagcactatccaagtctgtcagagagaactaaggcagataaaaagcagaagaagcaggtg 400  Q
    |||||| |||| |||||||||||||| ||||   ||||| || |||||| ||||||| || ||||| |||||| |||| | |||| ||||||| || |||    
T  17114911 ggaagaagacaatgatgaagccatcatatcagactttgaccaacactatgcaagtctatctgagagcactaagacagagagaaagaagaagaaacatgtg 17114812  T
Q  401 aacaaagtgaagcc 414  Q
    ||||||||||||||    
T  17114811 aacaaagtgaagcc 17114798  T

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Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 349 - 410
Target Start/End: Complemental strand, 13062111 - 13062050
Alignment:
Q  349 tccaagtctgtcagagagaactaaggcagataaaaagcagaagaagcaggtgaacaaagtga 410  Q
    ||||||||| || ||||| |||||| |||| |||||| ||||||||||||||||||||||||    
T  13062111 tccaagtctatctgagagcactaagacagagaaaaagaagaagaagcaggtgaacaaagtga 13062050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 335 - 402
Target Start/End: Complemental strand, 41035188 - 41035121
Alignment:
Q  335 tttgagcagcactatccaagtctgtcagagagaactaaggcagataaaaagcagaagaagcaggtgaa 402  Q
    ||||| || |||||||||||||| || ||||| | ||||||||| |||||| ||||||||||||||||    
T  41035188 tttgaacaacactatccaagtctatctgagagcaataaggcagagaaaaagaagaagaagcaggtgaa 41035121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 295 - 414
Target Start/End: Complemental strand, 26449737 - 26449620
Alignment:
Q  295 agttgaggaagaggacagtgatgaagccatcacatcaacttttgagcagcactatccaagtctgtcagagagaactaaggcagataaaaagcagaagaag 394  Q
    ||||||||||||||||| | |||||| |||||||||||  | |||||| |||||||| ||| |||||||||| ||||||||||| | |||||||||||||    
T  26449737 agttgaggaagaggacaataatgaagtcatcacatcaa--tctgagcaacactatcctagtttgtcagagagcactaaggcagagagaaagcagaagaag 26449640  T
Q  395 caggtgaacaaagtgaagcc 414  Q
    |||||||||| |||||||||    
T  26449639 caggtgaacagagtgaagcc 26449620  T

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Target: chr4 (Bit Score: 58; Significance: 3e-24; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 295 - 376
Target Start/End: Complemental strand, 12580028 - 12579947
Alignment:
Q  295 agttgaggaagaggacagtgatgaagccatcacatcaacttttgagcagcactatccaagtctgtcagagagaactaaggca 376  Q
    ||||||||||||||||| | ||||||||||||||||||| ||||||||||||||||||||||| |||||||| | |||||||    
T  12580028 agttgaggaagaggacattaatgaagccatcacatcaacctttgagcagcactatccaagtctatcagagagcaataaggca 12579947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 301 - 410
Target Start/End: Original strand, 19852407 - 19852516
Alignment:
Q  301 ggaagaggacagtgatgaagccatcacatcaacttttgagcagcactatccaagtctgtcagagagaactaaggcagataaaaagcagaagaagcaggtg 400  Q
    ||||||||||| || ||||||| ||| |||    |||||| | || ||||||||||| || ||||| ||||||||||| |||||| |||||||||| |||    
T  19852407 ggaagaggacaatgttgaagccctcatatctgactttgagaaacattatccaagtctatcggagagcactaaggcagagaaaaagaagaagaagcacgtg 19852506  T
Q  401 aacaaagtga 410  Q
     |||||||||    
T  19852507 cacaaagtga 19852516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 345 - 414
Target Start/End: Original strand, 37049967 - 37050036
Alignment:
Q  345 actatccaagtctgtcagagagaactaaggcagataaaaagcagaagaagcaggtgaacaaagtgaagcc 414  Q
    ||||||||||||| || || || ||||||||||| |||||| ||||||| || |||||||||||||||||    
T  37049967 actatccaagtctatctgaaagcactaaggcagagaaaaagaagaagaaacatgtgaacaaagtgaagcc 37050036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 301 - 410
Target Start/End: Complemental strand, 16593966 - 16593857
Alignment:
Q  301 ggaagaggacagtgatgaagccatcacatcaacttttgagcagcactatccaagtctgtcagagagaactaaggcagataaaaagcagaagaagcaggtg 400  Q
    ||||||||||| || ||||||| ||| |||    |||||| | || ||||||||||| || ||||| ||||||||||| |||||| || ||||||| |||    
T  16593966 ggaagaggacaatgttgaagccctcatatctgactttgagaaacattatccaagtctatcggagagcactaaggcagagaaaaagaagtagaagcacgtg 16593867  T
Q  401 aacaaagtga 410  Q
     |||||||||    
T  16593866 cacaaagtga 16593857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 335 - 414
Target Start/End: Complemental strand, 16832303 - 16832224
Alignment:
Q  335 tttgagcagcactatccaagtctgtcagagagaactaaggcagataaaaagcagaagaagcaggtgaacaaagtgaagcc 414  Q
    ||||||||||| | ||||| ||| ||  |||||||||||||||| | || | | |||||||| |||||||||||||||||    
T  16832303 tttgagcagcattgtccaactctttcttagagaactaaggcagagagaaggaataagaagcatgtgaacaaagtgaagcc 16832224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 335 - 376
Target Start/End: Complemental strand, 24240003 - 24239962
Alignment:
Q  335 tttgagcagcactatccaagtctgtcagagagaactaaggca 376  Q
    ||||||||||||||||||||||| || ||||| |||||||||    
T  24240003 tttgagcagcactatccaagtctatctgagagcactaaggca 24239962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 339 - 414
Target Start/End: Complemental strand, 14296417 - 14296342
Alignment:
Q  339 agcagcactatccaagtctgtcagagagaactaaggcagataaaaagcagaagaagcaggtgaacaaagtgaagcc 414  Q
    ||||||||||||||||||| || ||||| ||||||| ||| | |||| ||||||||||| |||||||| |||||||    
T  14296417 agcagcactatccaagtctatctgagagtactaaggtagagagaaagaagaagaagcagatgaacaaaatgaagcc 14296342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 334 - 413
Target Start/End: Complemental strand, 18811869 - 18811790
Alignment:
Q  334 ttttgagcagcactatccaagtctgtcagagagaactaaggcagataaaaagcagaagaagcaggtgaacaaagtgaagc 413  Q
    |||||||||||||||||||||| | |  ||||| | ||||||||| | |||| |||||||||||||| | ||||||||||    
T  18811869 ttttgagcagcactatccaagtttatttgagagcaataaggcagagagaaagaagaagaagcaggtgcataaagtgaagc 18811790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 380 - 414
Target Start/End: Complemental strand, 8413935 - 8413901
Alignment:
Q  380 aaaaagcagaagaagcaggtgaacaaagtgaagcc 414  Q
    ||||||||||||||||||| |||||||||||||||    
T  8413935 aaaaagcagaagaagcaggcgaacaaagtgaagcc 8413901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 349 - 407
Target Start/End: Original strand, 13502653 - 13502711
Alignment:
Q  349 tccaagtctgtcagagagaactaaggcagataaaaagcagaagaagcaggtgaacaaag 407  Q
    ||||||||| || ||||| ||||||||||| |||||| |||||||||  ||||||||||    
T  13502653 tccaagtctttcggagagcactaaggcagagaaaaagaagaagaagctcgtgaacaaag 13502711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 345 - 411
Target Start/End: Original strand, 37344586 - 37344652
Alignment:
Q  345 actatccaagtctgtcagagagaactaaggcagataaaaagcagaagaagcaggtgaacaaagtgaa 411  Q
    ||||||||||||| |  || || ||||||||||| | |||| ||||||| |||||||||||||||||    
T  37344586 actatccaagtctatttgaaagcactaaggcagagagaaagaagaagaaacaggtgaacaaagtgaa 37344652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 301 - 410
Target Start/End: Complemental strand, 8831419 - 8831310
Alignment:
Q  301 ggaagaggacagtgatgaagccatcacatcaacttttgagcagcactatccaagtctgtcagagagaactaaggcagataaaaagcagaagaagcaggtg 400  Q
    ||||||||||| || ||||| | ||| ||||   |||||||| || ||||||||||| || ||||| ||||||||||| ||| || ||||||||||  ||    
T  8831419 ggaagaggacaatgttgaagacctcatatcagactttgagcaacattatccaagtctatctgagagcactaaggcagagaaagagaagaagaagcacatg 8831320  T
Q  401 aacaaagtga 410  Q
    ||||||||||    
T  8831319 aacaaagtga 8831310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 302 - 410
Target Start/End: Complemental strand, 399916 - 399808
Alignment:
Q  302 gaagaggacagtgatgaagccatcacatcaacttttgagcagcactatccaagtctgtcagagagaactaaggcagataaaaagcagaagaagcaggtga 401  Q
    |||||||||| |||||||||  ||| |||||  |||||||| |||||||| ||| | |  ||||| ||||||||||| | |||| ||||||| || ||||    
T  399916 gaagaggacaatgatgaagcactcatatcaaactttgagcaacactatccgagtttatatgagagcactaaggcagagagaaagaagaagaaacatgtga 399817  T
Q  402 acaaagtga 410  Q
    |||||||||    
T  399816 acaaagtga 399808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 335 - 414
Target Start/End: Complemental strand, 27786950 - 27786871
Alignment:
Q  335 tttgagcagcactatccaagtctgtcagagagaactaaggcagataaaaagcagaagaagcaggtgaacaaagtgaagcc 414  Q
    ||||||||||||||||||||||| || ||||| | |||||| || | |||| |||| |||||| |||| |||||||||||    
T  27786950 tttgagcagcactatccaagtctatctgagagcaataaggcggagagaaagaagaataagcagatgaataaagtgaagcc 27786871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 335 - 414
Target Start/End: Complemental strand, 36206583 - 36206504
Alignment:
Q  335 tttgagcagcactatccaagtctgtcagagagaactaaggcagataaaaagcagaagaagcaggtgaacaaagtgaagcc 414  Q
    |||||||| |||| ||||||||| || ||||| || |||||||| | |||| ||||||||||  |||| |||||||||||    
T  36206583 tttgagcaacactttccaagtctatctgagagcaccaaggcagagagaaagaagaagaagcaaatgaataaagtgaagcc 36206504  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 335 - 408
Target Start/End: Complemental strand, 37307330 - 37307257
Alignment:
Q  335 tttgagcagcactatccaagtctgtcagagagaactaaggcagataaaaagcagaagaagcaggtgaacaaagt 408  Q
    |||||| ||||||||| ||||||||| ||||| ||||||| ||| | |||| |||||||||| |||||||||||    
T  37307330 tttgagtagcactatctaagtctgtctgagagcactaaggtagagagaaagaagaagaagcatgtgaacaaagt 37307257  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 345 - 414
Target Start/End: Complemental strand, 788428 - 788359
Alignment:
Q  345 actatccaagtctgtcagagagaactaaggcagataaaaagcagaagaagcaggtgaacaaagtgaagcc 414  Q
    ||||||||||||| |  ||||| | ||||||||| | |||| ||||||||||| |||||||| |||||||    
T  788428 actatccaagtctatttgagagcattaaggcagagagaaagaagaagaagcagatgaacaaaatgaagcc 788359  T

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Target: scaffold0531 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0531
Description:

Target: scaffold0531; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 347 - 410
Target Start/End: Original strand, 10228 - 10291
Alignment:
Q  347 tatccaagtctgtcagagagaactaaggcagataaaaagcagaagaagcaggtgaacaaagtga 410  Q
    ||||||||||| || ||||| ||||||||||| |||||| |||||||||| ||| |||||||||    
T  10228 tatccaagtctatcggagagcactaaggcagagaaaaagaagaagaagcacgtgcacaaagtga 10291  T

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