View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17713_low_5 (Length: 385)
Name: NF17713_low_5
Description: NF17713
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17713_low_5 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 160; Significance: 4e-85; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 194 - 369
Target Start/End: Original strand, 16528246 - 16528421
Alignment:
| Q |
194 |
tcagtatgctttttatatatagatatagattataaagcgtcatcgtaaaagtgttcaagtagaagacgcaaaagataaaaacaactgaaacataaaatct |
293 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
16528246 |
tcagtatgctttttatatataggtatagattataaagcgtcatcgtaaaagtgttgaagtagaagacgcaaaagataaaaacgactgaaacataaaatct |
16528345 |
T |
|
| Q |
294 |
gtatttaatcaagatagatgataaaatcaaagatacataccggaatccagatgcaggcaattactactgtaaatgc |
369 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16528346 |
gtatttaatcaagatagacgataaaatcaaagatacataccggaatccagatgcaggcaattactactgtaaatgc |
16528421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 241 - 369
Target Start/End: Original strand, 16569740 - 16569868
Alignment:
| Q |
241 |
aaagtgttcaagtagaagacgcaaaagataaaaacaactgaaacataaaatctgtatttaatcaagatagatgataaaatcaaagatacataccggaatc |
340 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||| | ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16569740 |
aaagtgttcaagtaaaagacgcaaaagataaaaaccaatgaaacataaaatctttatttaatcaagatagatgataaaatcaaagatacataccggaatc |
16569839 |
T |
|
| Q |
341 |
cagatgcaggcaattactactgtaaatgc |
369 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
16569840 |
cagatgcaggcaattactactgtaaatgc |
16569868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 11 - 100
Target Start/End: Original strand, 16528062 - 16528153
Alignment:
| Q |
11 |
cagagacgattatatgaacagtggagaca--gcacggataagatagaaaaaacacagaaattagttacgtacattgaggttcctgtctgtcc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16528062 |
cagagacgattatatgaacagtggagacaaagcacggataagatagaaaaaacacagaaattagttacgtacattgaggttcctgtctgtcc |
16528153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 313 - 361
Target Start/End: Original strand, 16519655 - 16519703
Alignment:
| Q |
313 |
gataaaatcaaagatacataccggaatccagatgcaggcaattactact |
361 |
Q |
| |
|
||||||| |||||||||||||||||||||| | |||||| || |||||| |
|
|
| T |
16519655 |
gataaaaccaaagatacataccggaatccacaagcaggcgataactact |
16519703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University