View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17713_low_6 (Length: 328)
Name: NF17713_low_6
Description: NF17713
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17713_low_6 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 297; Significance: 1e-167; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 1 - 313
Target Start/End: Complemental strand, 39241923 - 39241611
Alignment:
| Q |
1 |
catcatgtaaacactggatgatatggctttcacattttccaaacacctgcttgttcacttcctcaaactctgccctatcaacaaccttgcatatcttcaa |
100 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39241923 |
catcatgtaaacactggatgataaggctttcacattttccaaacacctgcttgttcacttcctcaaactctgccctatcaacaaccttgcatatcttcaa |
39241824 |
T |
|
| Q |
101 |
accatctcccaagtccacatcaacctgaacattgatttgagaggaaagctgatgaattgcatcatggtttgcaactcgaagtaatgccatcgatttaatt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
39241823 |
accatctcccaagtccacatcaacctgaaaattgatttgagaggaaagccgatgaattgcatcatgggttgcaactcgaagtaatgccatcgatttaatt |
39241724 |
T |
|
| Q |
201 |
tctttaaccccgtgattcttgaatatgttttcagaatctggtaagagatgacacatcatattctgaagcaagtcctctccaccgatggtacttcctgcca |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39241723 |
tctttaaccccgtgattcttgaatatgttttcagaatctggtaagagatgacacatcatattctgaagcaagtcctctccaccgatggtacttcctgcca |
39241624 |
T |
|
| Q |
301 |
cagcttttatctc |
313 |
Q |
| |
|
||||||||||||| |
|
|
| T |
39241623 |
cagcttttatctc |
39241611 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 1 - 312
Target Start/End: Complemental strand, 808275 - 807964
Alignment:
| Q |
1 |
catcatgtaaacactggatgatatggctttcacattttccaaacacctgcttgttcacttcctcaaactctgccctatcaacaaccttgcatatcttcaa |
100 |
Q |
| |
|
||||||||||||| ||||||||| |||||||||| ||| | ||||||| |||||||| ||||||||||| ||||| ||||||||||||||||||||||| |
|
|
| T |
808275 |
catcatgtaaacattggatgataaggctttcacacttttcgaacacctctttgttcacctcctcaaactccgccctgtcaacaaccttgcatatcttcaa |
808176 |
T |
|
| Q |
101 |
accatctcccaagtccacatcaacctgaacattgatttgagaggaaagctgatgaattgcatcatggtttgcaactcgaagtaatgccatcgatttaatt |
200 |
Q |
| |
|
|| || |||||| || ||||||||||||||| || |||| | ||||||||||||||||||||| ||| ||||||||||||| |||||||| || |||||| |
|
|
| T |
808175 |
actatttcccaaatctacatcaacctgaacactgctttgggtggaaagctgatgaattgcatcctgggttgcaactcgaagcaatgccattgacttaatt |
808076 |
T |
|
| Q |
201 |
tctttaaccccgtgattcttgaatatgttttcagaatctggtaagagatgacacatcatattctgaagcaagtcctctccaccgatggtacttcctgcca |
300 |
Q |
| |
|
|||| |||||||||| ||||||||| ||||||||||||||||||||||| | |||||||||||||||||| || ||||||||||||||||||||||||| |
|
|
| T |
808075 |
tcttcaaccccgtgacgcttgaatatattttcagaatctggtaagagatggcgcatcatattctgaagcaaatcttctccaccgatggtacttcctgcca |
807976 |
T |
|
| Q |
301 |
cagcttttatct |
312 |
Q |
| |
|
|||||||||| |
|
|
| T |
807975 |
aggcttttatct |
807964 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 5e-16; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 216 - 307
Target Start/End: Complemental strand, 47842917 - 47842826
Alignment:
| Q |
216 |
ttcttgaatatgttttcagaatctggtaagagatgacacatcatattctgaagcaagtcctctccaccgatggtacttcctgccacagcttt |
307 |
Q |
| |
|
||||||||||| |||||||||||||||||||||| || ||||||||| ||||||||| |||||||| | | ||||||||||| |||||| |
|
|
| T |
47842917 |
ttcttgaatatattttcagaatctggtaagagataacgtatcatattcacaagcaagtcttctccaccactagaacttcctgccaaagcttt |
47842826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 216 - 310
Target Start/End: Original strand, 42927003 - 42927097
Alignment:
| Q |
216 |
ttcttgaatatgttttcagaatctggtaagagatgacacatcatattctgaagcaagtcctctccaccgatggtacttcctgccacagcttttat |
310 |
Q |
| |
|
||||||||||| |||| |||||| |||||||||||||| |||||||| | |||||| || |||| ||| || | |||||||| || |||||||| |
|
|
| T |
42927003 |
ttcttgaatatatttttagaatcaggtaagagatgacaaatcatattttcaagcaaatcttctctaccaataggacttcctgtcagggcttttat |
42927097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 217 - 310
Target Start/End: Original strand, 44728001 - 44728094
Alignment:
| Q |
217 |
tcttgaatatgttttcagaatctggtaagagatgacacatcatattctgaagcaagtcctctccaccgatggtacttcctgccacagcttttat |
310 |
Q |
| |
|
|||||||||| ||||| |||| || |||||||||||||||||||| |||||| || |||||||| || | ||||||||||| |||||||| |
|
|
| T |
44728001 |
tcttgaatatattttcgtaatcgggaaagagatgacacatcatatttccaagcaaatcttctccaccaatagcacttcctgccaacgcttttat |
44728094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 27 - 148
Target Start/End: Complemental strand, 47843112 - 47842991
Alignment:
| Q |
27 |
ctttcacattttccaaacacctgcttgttcacttcctcaaactctgccctatcaacaaccttgcatatcttcaaaccatctcccaagtccacatcaacct |
126 |
Q |
| |
|
|||||||| ||| ||||||||| || || || ||||||||||| |||| | |||||||| ||||| |||||||||||||||||||| | ||||| || |
|
|
| T |
47843112 |
ctttcacacttttcaaacacctctttatttacatcctcaaactcctccctctttacaaccttacatattttcaaaccatctcccaagtctaaatcaaact |
47843013 |
T |
|
| Q |
127 |
gaacattgatttgagaggaaag |
148 |
Q |
| |
|
|||| | | ||||||||||| |
|
|
| T |
47843012 |
caacacttgtctgagaggaaag |
47842991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 81 - 157
Target Start/End: Original strand, 47879519 - 47879595
Alignment:
| Q |
81 |
acaaccttgcatatcttcaaaccatctcccaagtccacatcaacctgaacattgatttgagaggaaagctgatgaat |
157 |
Q |
| |
|
|||||||||| |||||| ||||||||||||||||| | ||||| || |||| | | ||||||||||| ||||||| |
|
|
| T |
47879519 |
acaaccttgcctatctttaaaccatctcccaagtctaaatcaaactcaacacttgtctgagaggaaagtcgatgaat |
47879595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University