View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17713_low_8 (Length: 262)
Name: NF17713_low_8
Description: NF17713
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17713_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 230; Significance: 1e-127; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 7 - 248
Target Start/End: Complemental strand, 6944096 - 6943855
Alignment:
| Q |
7 |
ttatatttgaagggacattgacgtgtgatgatagttaaaggaggaggaggatgtcgggtaggggtccatgatttagtgattagactataaacttccgctg |
106 |
Q |
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| T |
6944096 |
ttatatttgaagggacattgacgtgtgatgatagtaaaaggaggaggaggatgtcgggtaggggtccatgatttagtgattagactataaacttccgctg |
6943997 |
T |
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| Q |
107 |
atgaaacataaagtttgtgttttctccaatgattattgatacagagtttcacaactttgaaatcgatgatgttggaatcatcagcaccgaaaccatacaa |
206 |
Q |
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| T |
6943996 |
atgaaacagaaagtttgtgttttctccaatgattattgatacagagtttcacaactttgaaatcgatgatgttggaatcatcagcaccgaaaccatacaa |
6943897 |
T |
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| Q |
207 |
gtatgatccattactgaggtagcaggtgtgagggatatgatg |
248 |
Q |
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| T |
6943896 |
gtatgatccattactgaggtagcaggtgtgagggatacgatg |
6943855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 7 - 205
Target Start/End: Original strand, 7475074 - 7475263
Alignment:
| Q |
7 |
ttatatttgaagggacattgacgtgtgatgatagttaaaggaggaggaggatgtcgggtaggggtccatgatttagtgattagactataaacttccgctg |
106 |
Q |
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| T |
7475074 |
ttatatttggagggaatttttcgtgtgatgatagtaaaaggaggagca---tgtagggtaggagtccatgatttagtacctagactataaacttccgccc |
7475170 |
T |
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| Q |
107 |
atgaaacataaagtttgtgttttctccaatgattattgatacagagtttcacaactttgaaatcgatgatgttggaatcatcagcaccgaaaccataca |
205 |
Q |
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| T |
7475171 |
atgaaatataa----tgtttcttctc--gtaatacttgacatggagtttcacaactttgaaatcaatgatgtttggatcatctgcaccaaaaccataca |
7475263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 150 - 205
Target Start/End: Original strand, 7488078 - 7488133
Alignment:
| Q |
150 |
gagtttcacaactttgaaatcgatgatgttggaatcatcagcaccgaaaccataca |
205 |
Q |
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| T |
7488078 |
gagtttcacaactttgaagttgatgttgttgggatcatcggcaccgaaaccataca |
7488133 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 104
Target Start/End: Original strand, 7495434 - 7495516
Alignment:
| Q |
19 |
ggacattgacgtgtgatgatagttaaaggaggaggaggatgtcgggtaggggtccatgatttagtgattagactataaacttccgc |
104 |
Q |
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| T |
7495434 |
ggacgttgacgcgtgatgatagttaaaggatgagga---tgttgagtaggggtccataatttagtacttagattataaacttccgc |
7495516 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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