View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17714_high_1 (Length: 792)

Name: NF17714_high_1
Description: NF17714
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17714_high_1
NF17714_high_1
[»] chr8 (1 HSPs)
chr8 (17-774)||(37862739-37863500)


Alignment Details
Target: chr8 (Bit Score: 620; Significance: 0; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 620; E-Value: 0
Query Start/End: Original strand, 17 - 774
Target Start/End: Original strand, 37862739 - 37863500
Alignment:
Q  17 tctcaaagaacaaacagttcattagcaatgaactgtaaagggtgcatgtaaaaggaaagcaaaacactctagcataaagaaaaatgaaacttgattggac 116  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37862739 tctcaaagaacaaacagttcattagcaatgaactgtagagggtgcatgtaaaaggaaagcaaaacactctagcataaagaaaaatgaaacttgattggac 37862838  T
Q  117 atttgctgctagattaatgagttcctggtatgatatttacttaggatgattgcttccactgaactagtaatcaatcaacaaattccatattatcggctaa 216  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||    
T  37862839 atttgctgctagattaatgaattcctggtatgatatttacttaggatgattgcttccactgaactagtaatcaatcaacaaactccgtattatcggctaa 37862938  T
Q  217 gcactcagccatttcatatagatttttggaaccatggtcacaacattcttta-ttcaacatctaaacatacgcttgggttagtatttacacgctgtgaac 315  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||| ||||||||  | ||||||||||||||||  |||||||||    
T  37862939 gcactcagccatttcatataggtttttggaaccatggtcacaacattctttacttcaacaactaaacatttgtttgggttagtatttaccagctgtgaac 37863038  T
Q  316 aaacttaatattgcgaaatttctttggttaaaact-aagttcaaagtgaagtgacttatgcttagacacatatacaaacaaacagctcttcatcacttct 414  Q
    ||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||    
T  37863039 aaacttaatattgtgaaatttctttggttaaaactaaagttcaaagtgaagtgacttatgcttagacacatatacaaacaaacaactcttcatcatttct 37863138  T
Q  415 actcaaacaaggatttagagacaaaatatattttagttcgaaacaataaaataattccgttccaacc-----aaccaaacctgatttaaaaggttgcaat 509  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     ||||||||||||||||||||||||||||    
T  37863139 actcaaacaaggatttagagacaaaatatattttagttcgaaacaataaaataattccgttccaaccaaccaaaccaaacctgatttaaaaggttgcaat 37863238  T
Q  510 tgcaaattgcttccaaacataaaacaacaacaacaactctagtaatttattttcgagataatcataatgattattttctagtaatccaatgtttttcatg 609  Q
    ||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37863239 tgcaaattgcttccaaacataa---aacaacaacaactctagtaatttattttcgagataatcataatgattattttctagtaatccaatgtttttcatg 37863335  T
Q  610 cgaacctgaattgnnnnnnnnnnnnntagtgaacatttaaatgacacaagaatattgaattgaaaccaatggcatgtaccaaaagaggagtagtacctag 709  Q
    |||||||||||||             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37863336 cgaacctgaattgaaaaaacaaaaaatagtgaacatttaaatgacacaagaatattgaattgaaaccaatggcatgtaccaaaagaggagtagtacctag 37863435  T
Q  710 cattaatttgccaccattttcttctcatccttgttattgtcgtcgacggcattagctgtggaatg 774  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37863436 cattaatttgccaccattttcttctcatccttgttattgtcgtcgacggcattagctgtggaatg 37863500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University