View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17714_high_12 (Length: 232)
Name: NF17714_high_12
Description: NF17714
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17714_high_12 |
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Alignment Details
Target: chr8 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 10 - 216
Target Start/End: Complemental strand, 549231 - 549025
Alignment:
| Q |
10 |
catcatcaatagcttcacttatttggaacatgatgcaataaaatctatacaagatatcatttgtgtttaccctgtgggatccatcattcaaatagagtca |
109 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| |
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| T |
549231 |
catcatcaatagcttcacttatttggaacatgatgcaataaaatctatacaagatatcatttgtgtttaccctgtgggacccatcattcaaagagagtca |
549132 |
T |
|
| Q |
110 |
aaaagtaaagaaaataagttagagtgtattacatggttgaacaataagccttcaaaatctgttttgttcatctcttttgggagtggtggagcactcactc |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
549131 |
aaaagtaaagaaaataagttagagtgtattacatggttgaacaataagccttcaaaatctgttttgttcatctcttttgggagtggtggagcactcactc |
549032 |
T |
|
| Q |
210 |
atgaaca |
216 |
Q |
| |
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||||||| |
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| T |
549031 |
atgaaca |
549025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 10 - 216
Target Start/End: Original strand, 23423397 - 23423603
Alignment:
| Q |
10 |
catcatcaatagcttcacttatttggaacatgatgcaataaaatctatacaagatatcatttgtgtttaccctgtgggatccatcattcaaatagagtca |
109 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| |
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| T |
23423397 |
catcatcaatagcttcacttatttggaacatgatgcaataaaatctatacaagatatcatttgtgtttaccctgtgggacccatcattcaaagagagtca |
23423496 |
T |
|
| Q |
110 |
aaaagtaaagaaaataagttagagtgtattacatggttgaacaataagccttcaaaatctgttttgttcatctcttttgggagtggtggagcactcactc |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23423497 |
aaaagtaaagaaaataagttagagtgtattacatggttgaacaataagccttcaaaatctgttttgttcatctcttttgggagtggtggagcactcactc |
23423596 |
T |
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| Q |
210 |
atgaaca |
216 |
Q |
| |
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||||||| |
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|
| T |
23423597 |
atgaaca |
23423603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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