View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17714_high_2 (Length: 657)

Name: NF17714_high_2
Description: NF17714
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17714_high_2
NF17714_high_2
[»] chr6 (10 HSPs)
chr6 (16-77)||(1828497-1828558)
chr6 (579-646)||(6525810-6525877)
chr6 (491-566)||(6525644-6525719)
chr6 (577-645)||(6462494-6462562)
chr6 (579-646)||(1842426-1842493)
chr6 (580-646)||(6496113-6496179)
chr6 (341-396)||(1847166-1847222)
chr6 (592-646)||(6464785-6464839)
chr6 (577-646)||(6473715-6473784)
chr6 (606-646)||(1832402-1832442)
[»] chr5 (1 HSPs)
chr5 (233-282)||(17848766-17848814)


Alignment Details
Target: chr6 (Bit Score: 62; Significance: 2e-26; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 16 - 77
Target Start/End: Complemental strand, 1828558 - 1828497
Alignment:
Q  16 tcaataatgtctccctactcaacgttcagtttaaaacatattatccatgtacttcttgattt 77  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1828558 tcaataatgtctccctactcaacgttcagtttaaaacatattatccatgtacttcttgattt 1828497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 579 - 646
Target Start/End: Original strand, 6525810 - 6525877
Alignment:
Q  579 aacatcagaggacaagacttcagaaacaggaagcaatggtaagagcttaatgccgagcctacattctt 646  Q
    |||||||||| |||||||||||||||  ||||||||||||||||||| ||| || |||||||||||||    
T  6525810 aacatcagagaacaagacttcagaaattggaagcaatggtaagagctgaatcccaagcctacattctt 6525877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 491 - 566
Target Start/End: Original strand, 6525644 - 6525719
Alignment:
Q  491 tcaatgagtttccttcatcaaaaacatttgactttcttatcttttgcagtgcactttcattgtcataaattccttg 566  Q
    ||||||||||||| ||||||||| | ||  ||||||||||||| ||| ||||||||||||| |||||||| |||||    
T  6525644 tcaatgagtttccatcatcaaaacccttcaactttcttatcttctgctgtgcactttcattatcataaatcccttg 6525719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 577 - 645
Target Start/End: Complemental strand, 6462562 - 6462494
Alignment:
Q  577 tcaacatcagaggacaagacttcagaaacaggaagcaatggtaagagcttaatgccgagcctacattct 645  Q
    |||||||||||| |||| |||||||||| ||||| |||||||||||||| ||| || || |||||||||    
T  6462562 tcaacatcagagaacaatacttcagaaataggaaccaatggtaagagctgaattccaagtctacattct 6462494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 579 - 646
Target Start/End: Complemental strand, 1842493 - 1842426
Alignment:
Q  579 aacatcagaggacaagacttcagaaacaggaagcaatggtaagagcttaatgccgagcctacattctt 646  Q
    ||||||||||||||| | |||||||| ||| || | ||||||||||| ||||||||||| ||||||||    
T  1842493 aacatcagaggacaaaatttcagaaatagggagtagtggtaagagctgaatgccgagccaacattctt 1842426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 580 - 646
Target Start/End: Original strand, 6496113 - 6496179
Alignment:
Q  580 acatcagaggacaagacttcagaaacaggaagcaatggtaagagcttaatgccgagcctacattctt 646  Q
    ||||||||| |||| |||||||||| |||||||||||||||||||| ||  || | |||||||||||    
T  6496113 acatcagagaacaatacttcagaaataggaagcaatggtaagagctgaactccaaccctacattctt 6496179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 341 - 396
Target Start/End: Complemental strand, 1847222 - 1847166
Alignment:
Q  341 aaattatttaagacggct-tgcaatctggacccaaatttgagaatgaatggatgaaa 396  Q
    |||||||||||||||||  |||||||| |||||||| ||||||||||||| ||||||    
T  1847222 aaattatttaagacggcactgcaatctagacccaaagttgagaatgaatgtatgaaa 1847166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 592 - 646
Target Start/End: Original strand, 6464785 - 6464839
Alignment:
Q  592 aagacttcagaaacaggaagcaatggtaagagcttaatgccgagcctacattctt 646  Q
    |||| ||||||||  ||||||||||||||||||| ||| || |||||||||||||    
T  6464785 aagaattcagaaattggaagcaatggtaagagctgaatcccaagcctacattctt 6464839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 577 - 646
Target Start/End: Complemental strand, 6473784 - 6473715
Alignment:
Q  577 tcaacatcagaggacaagacttcagaaacaggaagcaatggtaagagcttaatgccgagcctacattctt 646  Q
    |||||||| ||  |||| |||||||||| ||||| |||||||| ||||| ||| || |||||||||||||    
T  6473784 tcaacatctgaaaacaaaacttcagaaataggaatcaatggtaggagctgaattccaagcctacattctt 6473715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 606 - 646
Target Start/End: Complemental strand, 1832442 - 1832402
Alignment:
Q  606 aggaagcaatggtaagagcttaatgccgagcctacattctt 646  Q
    |||||| ||||||||||||| ||||||||||| ||||||||    
T  1832442 aggaagaaatggtaagagctgaatgccgagccgacattctt 1832402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 233 - 282
Target Start/End: Complemental strand, 17848814 - 17848766
Alignment:
Q  233 ttgattttttgatgttatttacaagctaaataaaaagatgtctctttttg 282  Q
    |||| |||||||||||||||||||| ||||| |||||||||| |||||||    
T  17848814 ttgagtttttgatgttatttacaagttaaat-aaaagatgtcactttttg 17848766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University