View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17714_low_17 (Length: 217)
Name: NF17714_low_17
Description: NF17714
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17714_low_17 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 177; Significance: 1e-95; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 1 - 181
Target Start/End: Complemental strand, 4970303 - 4970123
Alignment:
| Q |
1 |
aaagcagcaaaagttgaatacaaacaaaatttaattaaatctttgtgatttttataataaatattttttatgagggtttgtttgtttctctaatattgct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4970303 |
aaagcagcaaaagttgaatacaaacaaaatttaattaaatctttgtgatttttataataaatattttttatgagggtttgtttgtttctctaatattgct |
4970204 |
T |
|
| Q |
101 |
gcctttttaaggatgatcttagaggatcctctcttcgaccatctgcttcattatgaggttgtttgttctttttctctatgg |
181 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4970203 |
gtctttttaaggatgatcttagaggatcctctcttcgaccatctgcttcattatgaggttgtttgttctttttctctatgg |
4970123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 125; Significance: 1e-64; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 125; E-Value: 1e-64
Query Start/End: Original strand, 4 - 179
Target Start/End: Complemental strand, 28571213 - 28571037
Alignment:
| Q |
4 |
gcagcaaaagttgaatacaaacaaaatttaattaaatctttgtgatttttataataaatattttttatgagggtttgtttgtttctctaatattgctgcc |
103 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| |||| |
|
|
| T |
28571213 |
gcagcaaacgttgaatacaaacaaaatttaattaaatctttgtgatttttattataaatattttttagaagggtttgtttgtttctctaatattgatgcc |
28571114 |
T |
|
| Q |
104 |
-tttttaaggatgatcttagaggatcctctcttcgaccatctgcttcattatgaggttgtttgttctttttctctat |
179 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| | |||||||||| |||||| |||||| || |||||||||| |
|
|
| T |
28571113 |
ttttttaaggatgatcttagaggatcctctcttcgaacgtctgcttcatcatgaggatgtttgctcgttttctctat |
28571037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University