View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17714_low_3 (Length: 560)
Name: NF17714_low_3
Description: NF17714
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17714_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 455; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 455; E-Value: 0
Query Start/End: Original strand, 1 - 544
Target Start/End: Original strand, 32707495 - 32708051
Alignment:
| Q |
1 |
tttttagaatttgaaagactaggtggtcgggtgccctacatatgaattgattggacatacaagactggttggccaccctgcaaaggaaattaaatatgag |
100 |
Q |
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||||||||||||| |||||| ||||||||| ||||||||| ||||| | |||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
32707495 |
tttttagaatttggaagact-ggtggtcggttgccctacacatgaagttattggacatacaagactgtttggccaccctgcaaaggaaattaaatatgag |
32707593 |
T |
|
| Q |
101 |
aaaccaaagctaactaaaactaatagtaaaataaacaaaagagccacatagggaggggtgcaccta--------------aactcataactctattgttt |
186 |
Q |
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| T |
32707594 |
aaaccaaagctaactaaaactaatagtaaaataaacaaaagagccacatatggaggggtgcacctaaaccttaaatcctaaactcataactctattgttt |
32707693 |
T |
|
| Q |
187 |
taataattaagacaataagcacttgaatgatgttggttcaatataaactccatatttatttttcgttgttttaaccaaattgatatcaattaagttatta |
286 |
Q |
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| T |
32707694 |
caataattaagacaataatcacttgaatgatgttggttcaatataaactacatatttatttttcgttgttttaaccaaattgatatcaattaagatatta |
32707793 |
T |
|
| Q |
287 |
ttccagtcgcgatcactttctaattttagcaaaataaaattttaaacattgcatgattagtactctaggtacatagaaagtgaaggatgattagttagca |
386 |
Q |
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| T |
32707794 |
ttccagtcacgatcactttctaattttagcaaaataaaattttaaacattgcatgattagtactctaggtacatagaaagtgaaggatgattagttagca |
32707893 |
T |
|
| Q |
387 |
caaaactatagtaaacacgtaacaaaattcacgatatcagttgcttctaaactaagatgctaacttaggccaatattaaattactaagtgtaggtctcaa |
486 |
Q |
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| T |
32707894 |
caaaactatagtaaacacgtaacaaaattcacgatatcagttgcttctaaactaagatgctaacttaggccaatattaaattactaagtgtaggtctcaa |
32707993 |
T |
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| Q |
487 |
ctcctaatgcaggttcatctgcctgcagcctatatataattagttgaagccatgaaga |
544 |
Q |
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| T |
32707994 |
ctcctaatgcaggttcatctgcctgcagcctatatataattagttgaagccatgaaga |
32708051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 214 - 281
Target Start/End: Complemental strand, 29726250 - 29726183
Alignment:
| Q |
214 |
tgatgttggttcaatataaactccatatttatttttcgttgttttaaccaaattgatatcaattaagt |
281 |
Q |
| |
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| T |
29726250 |
tgatgtcggttcaatacaaactacatatttattttctgttgttttaatcaaactgctatcaattaagt |
29726183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 237 - 289
Target Start/End: Complemental strand, 33060649 - 33060597
Alignment:
| Q |
237 |
catatttatttttcgttgttttaaccaaattgatatcaattaagttattattc |
289 |
Q |
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| T |
33060649 |
catatttatcttttgtcgttttgatcaaattgatatcaattaagttattattc |
33060597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 215 - 288
Target Start/End: Original strand, 7779848 - 7779921
Alignment:
| Q |
215 |
gatgttggttcaatataaactccatatttatttttcgttgttttaaccaaattgatatcaattaagttattatt |
288 |
Q |
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| T |
7779848 |
gatgttggtttaatacgagctacatatttattttccatagttttaatcaaattgatatcagttaagtcattatt |
7779921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 238 - 278
Target Start/End: Original strand, 14063598 - 14063638
Alignment:
| Q |
238 |
atatttatttttcgttgttttaaccaaattgatatcaatta |
278 |
Q |
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| T |
14063598 |
atatttatttttcgttgttttaatcaaacttatatcaatta |
14063638 |
T |
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