View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17714_low_4 (Length: 530)
Name: NF17714_low_4
Description: NF17714
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17714_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 316; Significance: 1e-178; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 186 - 516
Target Start/End: Complemental strand, 37621014 - 37620683
Alignment:
| Q |
186 |
aatatgctgacaaactttatctaacattactggcaaggttcatggatctcacaagctggtatcaatagatgtgcattttgtgcgacaaatggtagatgag |
285 |
Q |
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| T |
37621014 |
aatatgctgacaaactttatctaacattactggcaaggttcatggatctcacaagctggtatcaatagatatgcattttgtgcgacaaatggtagatgag |
37620915 |
T |
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| Q |
286 |
aagtagtatgatcattaatggttgtaacttttttgtatggatttgattaatatttggtcttaata-ttggtttattgctagaacatgtgcatcaaatgtt |
384 |
Q |
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| T |
37620914 |
aagtagtatgatcattaatggttgtaacttttttgtatggatttgattaatatttggtcttaataattggtttattgctagaacatgtgcatcaaatgtt |
37620815 |
T |
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| Q |
385 |
gtgttcacttagacgtaaaaaagataaatcacattaaaccgtacactatattagctttaaaagaactgaagactacattaaaagagctctaaattcacgg |
484 |
Q |
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| T |
37620814 |
gtgttcacttagacataaaaaagataaatcacattaaaccgtacactatattagctttaaaagaactgaagactacattaaaagagctctaaattcacgg |
37620715 |
T |
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| Q |
485 |
tgactattggccacaattcaaccaaacacact |
516 |
Q |
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| T |
37620714 |
tgactattggccacaattcaaccaaacacact |
37620683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 153; E-Value: 7e-81
Query Start/End: Original strand, 1 - 181
Target Start/End: Complemental strand, 37621222 - 37621042
Alignment:
| Q |
1 |
gttaagaaatctaaacatctaccatctatcacacatgttggtgaaaatatatcattttagaggagccaattccggcgtcagcgtttgtacatatacttaa |
100 |
Q |
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| T |
37621222 |
gttaagaaatctaaacatctaccatctatcacacatgttggtgaaaatatatcattttagaggagtcaattccgacgtcagcgtttgtacatatacctaa |
37621123 |
T |
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| Q |
101 |
atagaaggaaaaaagttgaaatagatgttgcatctcctacaaactttatgctcattcacggtaaactcacatatgcaatat |
181 |
Q |
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| T |
37621122 |
aaagaaggaaaaaagttgaaacagatgttgcatctcctataaactttatgctcattcacggcaaactcacatatgcaatat |
37621042 |
T |
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