View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17714_low_6 (Length: 491)
Name: NF17714_low_6
Description: NF17714
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17714_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 452; Significance: 0; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 452; E-Value: 0
Query Start/End: Original strand, 18 - 477
Target Start/End: Original strand, 41485661 - 41486120
Alignment:
| Q |
18 |
gaatgagaaagcagtaactaagagagaattttcagagaaggtgcaaatgaaagcaatcgagtggtgctcaaagtgggatggctgtgttaaggatcctagc |
117 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
41485661 |
gaatgagaaagcagtaactaagagagaattttcagagaaggtgcaaatgaaagcaatcgagtggtgctcaaagtgggatgactgtgttaaggatcctagc |
41485760 |
T |
|
| Q |
118 |
tggcatccgttcaaagttgtaactgacagagaagggaactccaaggtacaacgacttcacaaattatgtttgtttgttaaaattaatattttttctcaac |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41485761 |
tggcatccgttcaaagttgtaactgacagagaagggaactccaaggtacaacgacttcacaaattatgtttgtttgttaaaattaatattttttctcaac |
41485860 |
T |
|
| Q |
218 |
tgttctgttaagacacacctttggatatatttattccctaaaacatataatgcaccatttcttaataattagtaagcatggtaattggtactgtgtagtg |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
41485861 |
tgttctgttaagacacacctttggatatatttattccctaaaacatataatgcaccatttcttaataattagtaagcatggtaattggtattgtgtagtg |
41485960 |
T |
|
| Q |
318 |
atctatttactggaaattttgctggtgttagcacttacttggcatgtctgtttccctgctatgagctttatggaccatgatctaatatatgtaagatata |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41485961 |
atctatttactggaaattttgctggtgttagcacttacttggcatgtctgtttccctgctatgagctttatggaccatgatctaatatatgtaagatata |
41486060 |
T |
|
| Q |
418 |
tcacacaggaaattttagatggagaagataaaaagctgaaaagtttgaaggatgagtttg |
477 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41486061 |
tcacacaggaaattttagatggagaagataaaaagctgaaaagtttgaaggatgagtttg |
41486120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 18 - 475
Target Start/End: Original strand, 40752785 - 40753248
Alignment:
| Q |
18 |
gaatgagaaagcagtaactaagagagaattttcagagaaggtgcaaatgaaagcaatcgagtggtgctcaaagtgggatggctgtgttaaggatcctagc |
117 |
Q |
| |
|
|||||||||||||| ||||||||| || |||||||| | | |||||||||||||||||||||||||||||||||||| ||||||||| ||||| ||| |
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|
| T |
40752785 |
gaatgagaaagcagctactaagagaaaactttcagaggcagggaaaatgaaagcaatcgagtggtgctcaaagtgggatgactgtgttaaagatccaagc |
40752884 |
T |
|
| Q |
118 |
tggcatccgttcaaagttgtaactgacagagaagggaactccaaggtacaacgacttcacaaattatgtttgtttgttaaaattaatattttttctcaac |
217 |
Q |
| |
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||||||||||||||||||||||| || | |||||||||||||||||||||| |||||||| |||||||||||| |||||| |||||||||||||||||| |
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|
| T |
40752885 |
tggcatccgttcaaagttgtaaccgataaagaagggaactccaaggtacaatgacttcacggattatgtttgttcgttaaagttaatattttttctcaac |
40752984 |
T |
|
| Q |
218 |
tgttctgttaagacacacctttggatatatttattcc--------ctaaaacatataatgcaccatttcttaataattagtaagcatggtaattggtact |
309 |
Q |
| |
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||||| |||||| || | |||||||||||||| || ||||||||||||||||| |||||| |||||||||| ||||||||||||||||| | |
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|
| T |
40752985 |
agttctattaagaaactctgttggatatatttatcccctaaatggctaaaacatataatgcagcatttcataataattagaaagcatggtaattggtatt |
40753084 |
T |
|
| Q |
310 |
gtgtagtgatctatttactggaaattttgctggtgttagcacttacttggcatgtctgtttccctgctatgagctttatggaccatgatctaatatatgt |
409 |
Q |
| |
|
|||||| || ||||||||||||| ||| ||| || ||||||||| ||||||| | |||||||||||||||| || || ||||||||||||||||||| |
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| T |
40753085 |
gtgtagggacctatttactggaacttt--ctgttgctagcacttatttggcatatttgtttccctgctatgaactgcataaaccatgatctaatatatgt |
40753182 |
T |
|
| Q |
410 |
aagatatatcacacaggaaattttagatggagaagataaaaagctgaaaagtttgaaggatgagtt |
475 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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|
| T |
40753183 |
tagatatatcacacaggaaattttagatggagaagatgaaaagctgaaaagtttgaaggatgagtt |
40753248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 301 - 475
Target Start/End: Original strand, 41471819 - 41471992
Alignment:
| Q |
301 |
attggtactgtgtagtgatctatttactggaaattttgctggtgttagcacttacttggcatgtctgtttccctgctatgagctttatggaccatgatct |
400 |
Q |
| |
|
||||||| ||||| ||||||||||| | |||| || |||| |||||||||||| ||||||||| |||||||||| ||||| || |||| ||||||||| |
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|
| T |
41471819 |
attggtattgtgttgtgatctatttgcctgaaactt-gctgctgttagcacttatttggcatgtttgtttccctgatatgaactgcatgggccatgatct |
41471917 |
T |
|
| Q |
401 |
aatatatgtaagatatatcacacaggaaattttagatggagaagataaaaagctgaaaagtttgaaggatgagtt |
475 |
Q |
| |
|
||||||||| | ||||| ||| |||||||||||||| ||||||||| ||||||| |||||||||||||||||||| |
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|
| T |
41471918 |
aatatatgttacatataccacgcaggaaattttagacggagaagatgaaaagctaaaaagtttgaaggatgagtt |
41471992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 301 - 475
Target Start/End: Original strand, 41478820 - 41478993
Alignment:
| Q |
301 |
attggtactgtgtagtgatctatttactggaaattttgctggtgttagcacttacttggcatgtctgtttccctgctatgagctttatggaccatgatct |
400 |
Q |
| |
|
||||||| ||||| ||||||||||| | |||| || |||| |||||||||||| ||||||||| |||||||||| ||||| || |||||||||||||| |
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|
| T |
41478820 |
attggtattgtgttgtgatctatttgcctgaaactt-gctgctgttagcacttatttggcatgtttgtttccctgatatgaactgcatggaccatgatct |
41478918 |
T |
|
| Q |
401 |
aatatatgtaagatatatcacacaggaaattttagatggagaagataaaaagctgaaaagtttgaaggatgagtt |
475 |
Q |
| |
|
||||||||| | ||||| ||| |||||||||| ||| ||||||||| ||||||| |||||||||||||||||||| |
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| T |
41478919 |
aatatatgttacatataccacgcaggaaatttcagacggagaagatgaaaagctaaaaagtttgaaggatgagtt |
41478993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 60 - 168
Target Start/End: Original strand, 41471607 - 41471715
Alignment:
| Q |
60 |
gcaaatgaaagcaatcgagtggtgctcaaagtgggatggctgtgttaaggatcctagctggcatccgttcaaagttgtaactgacagagaagggaactcc |
159 |
Q |
| |
|
|||| |||||||||||||||||||||| | |||||||| |||| |||| ||||| ||||||||||||||||||||||| ||||| | ||| ||||| ||| |
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|
| T |
41471607 |
gcaattgaaagcaatcgagtggtgctctacgtgggatgactgtcttaaagatcccagctggcatccgttcaaagttgtgactgataaagacgggaaatcc |
41471706 |
T |
|
| Q |
160 |
aaggtacaa |
168 |
Q |
| |
|
||||||||| |
|
|
| T |
41471707 |
aaggtacaa |
41471715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 60 - 168
Target Start/End: Original strand, 41478495 - 41478603
Alignment:
| Q |
60 |
gcaaatgaaagcaatcgagtggtgctcaaagtgggatggctgtgttaaggatcctagctggcatccgttcaaagttgtaactgacagagaagggaactcc |
159 |
Q |
| |
|
|||| |||||||||||||||||||||| | |||||||| |||| |||| ||||| ||||||||||||||||||||||| ||||| | ||| ||||| ||| |
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|
| T |
41478495 |
gcaattgaaagcaatcgagtggtgctctacgtgggatgactgtcttaaagatcccagctggcatccgttcaaagttgtgactgataaagacgggaaatcc |
41478594 |
T |
|
| Q |
160 |
aaggtacaa |
168 |
Q |
| |
|
||||||||| |
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|
| T |
41478595 |
aaggtacaa |
41478603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 66; Significance: 6e-29; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 388 - 473
Target Start/End: Complemental strand, 16407494 - 16407409
Alignment:
| Q |
388 |
tggaccatgatctaatatatgtaagatatatcacacaggaaattttagatggagaagataaaaagctgaaaagtttgaaggatgag |
473 |
Q |
| |
|
||||| |||||||||||||||| ||||||||||| |||||||||||||| ||||||||| |||||||||||||||||||||||||| |
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|
| T |
16407494 |
tggacgatgatctaatatatgttagatatatcacgcaggaaattttagacggagaagatgaaaagctgaaaagtttgaaggatgag |
16407409 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 58 - 187
Target Start/End: Original strand, 52481721 - 52481850
Alignment:
| Q |
58 |
gtgcaaatgaaagcaatcgagtggtgctcaaagtgggatggctgtgttaaggatcctagctggcatccgttcaaagttgtaactgacagagaagggaact |
157 |
Q |
| |
|
|||||| |||||||| |||||||||||||||||||||||| ||| |||| ||||| || |||||||| |||||| ||||| ||| | ||||||||| | |
|
|
| T |
52481721 |
gtgcaattgaaagcagtcgagtggtgctcaaagtgggatgaatgtcttaaagatccaagttggcatcccttcaaaattgtagttgataaagaagggaaat |
52481820 |
T |
|
| Q |
158 |
ccaaggtacaacgacttcacaaattatgtt |
187 |
Q |
| |
|
||||||||||| |||||| |||||||||| |
|
|
| T |
52481821 |
ccaaggtacaatgacttccaaaattatgtt |
52481850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 391 - 472
Target Start/End: Original strand, 52482147 - 52482227
Alignment:
| Q |
391 |
accatgatctaatatatgtaagatatatcacacaggaaattttagatggagaagataaaaagctgaaaagtttgaaggatga |
472 |
Q |
| |
|
||||||||||||||||||| | |||||| |||||||||||||||| ||||||||| |||| ||||||||||| |||||||| |
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|
| T |
52482147 |
accatgatctaatatatgtta-atatatggcacaggaaattttagacggagaagatgaaaaactgaaaagtttaaaggatga |
52482227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 66 - 143
Target Start/End: Complemental strand, 16407765 - 16407688
Alignment:
| Q |
66 |
gaaagcaatcgagtggtgctcaaagtgggatggctgtgttaaggatcctagctggcatccgttcaaagttgtaactga |
143 |
Q |
| |
|
|||||||| |||||||||||||||||||||| | | ||| ||||| |||||||||||||||||| |||||||||| |
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|
| T |
16407765 |
gaaagcaaatgagtggtgctcaaagtgggatgaatatcttagcgatccaagctggcatccgttcaaatttgtaactga |
16407688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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