View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17714_low_7 (Length: 306)
Name: NF17714_low_7
Description: NF17714
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17714_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 258; Significance: 1e-144; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 15 - 288
Target Start/End: Original strand, 42549177 - 42549450
Alignment:
| Q |
15 |
gaagaaggccttaggggtgaatgttgatgaatcatttgtttatgagaaatgtagtaaaattgtttgggctgcattgcatgctgatttaatgaaaagtgta |
114 |
Q |
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| T |
42549177 |
gaagaaggccttaggggtgaatgttgatgaatcatttgtttatgagaaatgtagtaaaattgtttgggctgcattgcatgctgatttaatgaaaagtgta |
42549276 |
T |
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| Q |
115 |
aagtatatggtagagaagttattgaaggaggagatgagggtgttgttgtatcaaggtcagcgcgatttgagggtcggtgttgttcaagtagaggcttggg |
214 |
Q |
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| T |
42549277 |
aagtatatggtagggaagttgttgaaggagaagatgagggtgttgttgtatcaaggtcagcgcgatttgagggtcggtgttgttcaagtagaggcttggg |
42549376 |
T |
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| Q |
215 |
tgaagactatgaagtgggaagggattgaggattttgtgaatgccgagaggaagatttggaaggtaaatggagag |
288 |
Q |
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| T |
42549377 |
tgaagactatgaagtgggaatggattgaggattttgtgaatgccgagaggaagatttggaaggtaaatggagag |
42549450 |
T |
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Target: chr4 (Bit Score: 79; Significance: 6e-37; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 15 - 289
Target Start/End: Original strand, 33016592 - 33016866
Alignment:
| Q |
15 |
gaagaaggccttaggggtgaatgttgatgaatcatttgtttatgagaaatgtagtaaaattgtttgggctgcattgcatgctgatttaatgaaaagtgta |
114 |
Q |
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| T |
33016592 |
gaagaaggctttgggggtaaatgtgaatgaatcatttgtttacgaggtttgcagtgacattgttggggatgtattgcatgctgatgtaatgaaaagtgtt |
33016691 |
T |
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| Q |
115 |
aagtatatggtagagaagttattgaaggaggagatgagggtgttgttgtatcaaggtcagcgcgatttgagggtcggtgttgttcaagtagaggcttggg |
214 |
Q |
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| T |
33016692 |
aagtttatggtggagaagttgttgagtgagagtactagggtgctattatatcaagctcagcgcgatttgcaagatggcgtggttcaaacggatgtttggg |
33016791 |
T |
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| Q |
215 |
tgaagactatgaagtgggaagggattgaggattttgtgaatgccgagaggaagatttggaaggtaaatggagagt |
289 |
Q |
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| T |
33016792 |
tgaagactatgaaatgggaagggattgtggagtttttgaatgctgagagggagatttggaaggtaaatggagagt |
33016866 |
T |
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